DreINT0054254 @ danRer10
Intron Retention
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25620388-25623181:-
Coord C1 exon
chr20:25623019-25623181
Coord A exon
chr20:25620541-25623018
Coord C2 exon
chr20:25620388-25620540
Length
2478 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CTTCTTTTTGTCCTCTGCAGCTG
3' ss Score
11.98
Exon sequences
Seq C1 exon
CTCGGCCATGCCTACAACAATATCTTCAGTCTTCGATTAGGAAGTGACAAAACCGTCTTCATTACTGGTTATAAAATGGTAAAGGAGGCCCTGGTGACACAAGCTGAAAACTTTGTGGATCGGCCCAACAGTCCAGTGCTAGCACGTGTGTATTCTGGAAATG
Seq A exon
GTAGGTCAACAATGTGAAAGTGTGAAAAAAGAGAAATGCTACACATGGCCTCCATGTCACACTGTAAGATCACAGTTGTCACACAGTAATGTCAGACTGAGAAACAATCAAGACGCATCAAATACAGATGAGCAAGAAAACTCACCCAGTGTGAGTTCGGCTTAGTGCCAGATTTATAAGGTGTTGCTACAGTGGAATGAACCACCAATTACTCTGGCATATCCTCCTGAGACCCCGCCCATTGACTTGTTTGCTCTGTAGTGGGCATTGCGTTTTCATGAATTTTCTTTGAATTTTTTGAGCTACTCTGCCAAGTCCTCTTGTACTGTTTAGAGGACATCCTGGGCTTTCTAGTGTTATGTCATTTGATTGGCTGGCATGCTAGGAACCACTTCTTACACTGCATCCAAAATGGCCGACATACAAAAAAAGCACATTTTATGGGAAGGAGAGATGCATGTAAATTTACCTTTTAAATGTTTTTTTCCTATTATAATTACATATATATTTGTTTATTAAAGTGTCAGGAACAATGCATTTAGCTTTCAAAGCTGTTAACTTGTTTGTGTTTTAAAATGTCATCCTTTTTTAAATGTCCACTTAAGTGGACACCAGGACCATCTTAATGTTATTAATGACTGCATGTTGTAGCAGGCAAAACTGAAGCAGAGACGATTCTTTATAAGATAGCTGAGGGAGACTCTGATTTAGAGTCTGACAATCAGACAATTAGAGAATTAGAGACAATTAGAAAATGACAATCAGATTTAAATCGCTTTTATGTTAAATTTGTTTTGGATTAACATCACTTCTTTCTTTCTTTTTTTTCTTTTTTTTTTGAGTTCGGCTCTCTTTTAGACTGAACTGTTTTAGGAATTTTAATACAAAAGAAAAAAATTGGCTTTTGTTTTTGTTACATTAATATTGGATTAATATCCCTTTACAGCCATATCCTGAACAGTTTTGTTGTCTGAGGGGCGGTCGTTTTGAACTAAAATGGTCCTGCGGTCCACTACAGTGGACATGCTATAAAAAAATGTGAAAACTCTTAATTGTAGAATTTTTTTTATAACCCAAAGGATGTAAAAAATCACAGAAAAAAAAGAAAAAAAATTCTTTGGGTCTCAGGAGGACATATTTTATGCAGCGGATGCCCTTCGGGTTGGGAAACACTCATACACTCTAAAATAAACAAACTGTTGCAATAATTTTACTCAAAGTGTGCCTCAATCATAAAATCAGAATTGTTTTGACATTTTCTCGCAGTAGTTTGTAATTCAGCTTCGGGGTTCCTGTTGGCTCTTGATTTGAGGTTCTAACGGTAAAAAAGACACACTGTAGGAAAGTGTCTAAAATCCGACACTGCCAGAATATCATCGGCAGGAAACTCTGATCGCTAGGGCCATAAAGCAGATGTTGGTGAAAACGTCAGACCAACATTTAAAAAGGATTTTTTCGCATTTTCTAAATTTGTTTCAGCCAGCAAAATTGCAAAAAAAAAAAAAGTAAAATAACTGCTGTTGAATTACAGAAATGTACTTAAGTTAAAATGATCTGGTAAATTTCTGTAATTCAACCTCTGTTATTTCACAGTAAATTCCTGTAATTTAACAGCCATTATTTTACGGTTTATTTCCGGCACCCGAACTGCTGGAAATAAACCATAAAATTACGGATTTTTAAAAAAGTGTACAGTATGTTAATTTATTACATTTATTAACTGTTAATTCTTTTAAATAAATGTACATTTTACATTTACAGAATGAAAAGAGTTTTATTTGTGTTTTGTGTGCATTGAGATTTGTAAGAATTTTAAGTATTGAGTCAAAAATTACCTATCTGGCAATTAAATTACTTTTTAAACATTACACTTTTAATGATGTACTTTTCTACAATTTTACTTTTGAAGTAACTGACACAACACAACATGTAACTAAATATTTATTATTATTATTATTATTATTATTATGAATAATTATATTTATTTTAATATATGTTTAATATTCATTCATTCATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCTGGGATCGCCACAGCAGAATGGACCACCAACATTTCCAGCATATGTATTACGCAGCAGATGCCCTTCCAGCTGTAACCCATCACTGGGAAACCCATACACTCGTTCACACACGTTCACTATGGACAATTTAGCTTACCCAATTTACCTATACCACATGTCTTTGGACTTGCGGGGGAAACCGAAGCACCCGGAGGAAACCCACTCAAACACAGGATGAACATGCAAATTCCACAAATAATAATAAATAAAAAAATAAATAAAATAAATATTTAAACTGTATTGAAACATCCCAAAGCTCAAACAAAATAAATAGAAAACAACATAGGAATATATAATAATAAACAAAATAATATATTTCGATTTGCAAAAATTTATGTACCAATTTTCACTGATCATGTTAGCGAGGCCTTCTTTTTGTCCTCTGCAG
Seq C2 exon
CTGGACTCTTCTTCAGTAATGGTGAGATGTGGAAGAAGCAACGACGCTTCGCTCTGTCAACACTGAGGAACTTTGGATTGGGAAAGAAAACAATGGAGCTGGCCATCTGTGAGGAGAGCCGCTTTCTTCTGGAAGAGATAGACGAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953:ENSDART00000063058:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]