DreINT0054271 @ danRer10
Intron Retention
Gene
ENSDARG00000042978 | cyp2p6
Description
cytochrome P450, family 2, subfamily P, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-790]
Coordinates
chr20:25665204-25665626:+
Coord C1 exon
chr20:25665204-25665364
Coord A exon
chr20:25665365-25665449
Coord C2 exon
chr20:25665450-25665626
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
3' ss Seq
TTTTTGTATTCTTTGTTCAGCTT
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTCGACCTTTTGACCCTCACTTACTTCTGAACAACGCTATCTCAAATGTGATCTGTGTGCTGGTGTTTGGTAATCGATTTGACTACAGTGACCATCACTTCCAGACTCTGCTGAACAACATCAATGAGGCTATGTATCTGGATGGAACAATTTGGGCTCAA
Seq A exon
GTAAACAATTTTAGAGTATGACAATCTATTTCTGCCCTTTCAGCATCTTTGTTGGACACCTTATATTTTTGTATTCTTTGTTCAG
Seq C2 exon
CTTTATAACTCCCACCCACGGATTATGCGGCTACTGCCTGGACCACACAAGAAAAATATTACTTTGTGGAACAAAGTGATTGACTTTGCTCGAGAGAGGGTGAAAGAACACAGAGTGGATTATGATCCATCAAATCCTCGAGACTACGTTGACTGCTTTCTAGCTGAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042978:ENSDART00000063100:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATCTGTGTGCTGGTGTT
R:
TCTTGTGTGGTCCAGGCAGTA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]