DreINT0054272 @ danRer10
Intron Retention
Gene
ENSDARG00000042978 | cyp2p6
Description
cytochrome P450, family 2, subfamily P, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-790]
Coordinates
chr20:25667079-25667499:+
Coord C1 exon
chr20:25667079-25667266
Coord A exon
chr20:25667267-25667357
Coord C2 exon
chr20:25667358-25667499
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
AAATTTGTTTGTATTTTTAGGGC
3' ss Score
8.63
Exon sequences
Seq C1 exon
CTAAAGTTCAGGAGGAGATTGATCGTGTTATTGGAAGCTCACGGCAGCCATCTGTATCAGACAGAGACAACATGCCCTACACCAATGCTGTCATTCATGAGATACAGAGATTTGGAAATATTGCCGCATTAAATTTGCCGCGGGCTGCTGTGAAAGATATCCAAGTTGGGAAATACTTAATTCCAAAG
Seq A exon
GTACAGTAACAATAGTTGGTGTAACATTGCATTGTACGTCTACAGACAGCATGTATTGTTTGATAAATTTAAAATTTGTTTGTATTTTTAG
Seq C2 exon
GGCACAATTGTAATTGGCAATTTGACATCAGTGCTGTTTGATGAGTCTGAGTGGGAGACGCCTCACTCTTTTAACCCGGGTCACTTTCTGGATGCTGAGGGCAAATTCAGGAGGAGAGATGCCTTTTTACCTTTTTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042978:ENSDART00000063100:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCCTACACCAATGCTGT
R:
GCGTCTCCCACTCAGACTCAT
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]