DreINT0057192 @ danRer10
Intron Retention
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27454460-27456648:-
Coord C1 exon
chr23:27456546-27456648
Coord A exon
chr23:27454525-27456545
Coord C2 exon
chr23:27454460-27454524
Length
2021 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATTTCTTTTATTATGTTAGGAG
3' ss Score
5.54
Exon sequences
Seq C1 exon
TATAAGGCCTCTAAGGAGGGTACGGTGATGGGAGTGGCTGTGTCGAAAATCTCCATGCTGACACACTGCCAGGCTCTAACTCAGGCCTGTAATTACTGTGAAG
Seq A exon
GTGAGCGCTACAGATCAGTAAACACATTTAGATATCCCTGTCATCTCAGCAGCACAACACTCAGCGACTCTTGAATGCTCCATAATTAAGCACTAATTAATTTATAGCCTTTGGTTGGTCATAGATTTTTATTGGATTTATAGGATTATTACATTATATTTTTTTCTTCATATTTAATTATCAAATTGTATAATATTTGGAAATTAAATTATTTTGTGTTGTATTTGATATTCAAATCTCTGTTGTTAATTTTGTTTATCTAAATCTGTTGACTGTCTTATCTATGTTTGAGTCAACATTTATTTATTATTTGATATTTAACATATTAACTCTATATTTTAATGTTTTTCATAAACGTGATGGTAAGGGTAGTCATGTTCTTAAAGGGCCATGAAACCCCCATCTCAGCAGGGTGTTTTCTCACCTCTAGTTTAAAAAAAGTCAGGTAAGTGGGTGAGTCCAGCTTTGTTTAGGTGGGAGTGGTGAAAGAGGGAAGGGTTTGCATGAAAAGCGGAGTTTCAGTACGAGCATGCGCTGATTTTTACAGATGCAAAACAAACACAGACGCAGGAGAGTAAGACAGTGACTATGTTTACATGGACATCAGTAATCTCGTTATCTGCCAAATCATTAATTTGTTGACTTTAACTGCAGTTTGGCACTTTCACATTTTTAATTCAGGAACATTTCATGATATTGAAAGCGATGAATTGGAAGAGTGTTGTTTTAATGGAATGTTTGATTCCGCACGCCGTATGAGGTAAAAAAAAAGCGTTTTTCTGTAACTTAGATGCACTTGGTTGGTGCAGAGAATGTCGTCAGAAAGCCGTGTGTGTGTATAGACTATTCTGTCACAAAATAGTTTGATTAAGGTGTTTACATTTGGAGAGCAGCATTTACAGCGGATCTGTACTGTAAACTTGGTAACTAAATCATTTTGACTAAGGTATGTCTTTAAAAACTGAAAGATTATTGCTGATGATACTAACTACCTTGGCCTTTGACTGAATAAACATAAACAAAGAACATTGATCACATACTTACCAAATTCATAGAGAAAGAACAATCAACCAAGTCTTTTTTAAAAGAAGGCGAGTAGTATTTCCGGATTTCACCATTTCCAGATGCGAAAAGTTCTTGGGTAAAACATATTTTTGTTGCGTGTCAGTAGACCACTGTAATCCACATTTGAGTTCAGCTGGGCTCTCATAGCGGTGAAATGAAAACAAAACCTTTATTGCAGCATATTTAAAAACGCAACCCTGTCGACTCATGTCTCCAAACAATTCTTCTTTTTCAACTTGTTTTACTTACTGTTGGCAACACAATGCGGTGTCTCTCTGTCATCTGAACACTGTAACAGGTAAAAGGAGTCTTTGAAGCTATCATGCTTATTAATGAAGTTGCACCTCATACGCAAAAGAGCTCGCTGATTTTTTTCAAACCAAGTCTTTCTCTTAAATTAATAATGAAAACTCAAAGACTTGACGTTGTACTCGCCGGTACAAACATCCAGTCTCCTCGCTGGAACTTACACAAGGATTTCATTGCCGTGACATAGCTTCAAAATTTCTTTTCAAGCCGGAAGAACAAATTTGCTCGAAATAACGCAAAAACAACCAATTTACACTTTTTTGTGAAATATATGTGTCCTAATGGTGTTTTTAGCTATGTAGGACATATAGATGATTGTCAACATCTCAAAAAATGTGTTTTAGTGTTTCGTGACCCTTTAAGATTTTAAATTGGATTTTATATTTTCGGTTCCATTTTACCTTTCTGTTTTTGTCTTAATGGATTTGTTTTTGTTTTTGGTCACTTAAATAATTAAGCTCAAAACATATTCTTCTTAATCTTCTCATCTAAGATTTATATATTTACTTCAGCATTGTTTCAGTTCTAAATTGTTGTGTTTTGGTTAACATTAAGTACACAGAAAATACTTAATATGTATTAAATGCAGCTTAAATGCAGTTTGTTTTACATAAGTGTTGATGTTTTTATTTCTTTTATTATGTTAG
Seq C2 exon
GAGAAACACTGGTTAATGTCCTGGATTTCAAAAAGGACTCTGGGCTTTGGCATGGAGTTCTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350:ENSDART00000019521:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]