DreINT0058028 @ danRer10
Intron Retention
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19547403-19549810:-
Coord C1 exon
chr16:19549588-19549810
Coord A exon
chr16:19547520-19549587
Coord C2 exon
chr16:19547403-19547519
Length
2068 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TACTCTGTTGACTGTATCAGGAG
3' ss Score
5.07
Exon sequences
Seq C1 exon
CATTGGTGAGCTGGAGGAGTTCATGGAGCAGGCTGAATCCAGGCTTAAAGAGCCAGTGTGCAGTGGAGATTACCAGGCTCTTGTTGAGGTGAAGGGCTTCCTGCTGGCTATCAGAAACCGTCAGCATAATACAGAGCGGCTTTTTGAGCCTGTCCGTGAAATGGTCAATCTTCTGGAGCAGTTTGGAGAAACCTTACCTGACAGTATTTACATTCAGCTTGAG
Seq A exon
GTGAGAGTTTTTGAAAGCACTTCACAAGATTTTGTTCTCAGAAACTGACAGTTTGCTGTTAATTTAATTATCAGATCATCTATAATGTAATGTAGAATACATTAAAGTTAAAGTTAATTTATTGAATTAATTTGTTGAAAAAGATGTGATCTTTTTGTCATGGTCTTTTTCTCATATTGTTTACAGTATAAGCTATTTAAAAGTTTTTGCTCAGTAAGGACACAATGAATTAATAAAACATGACAGAAAAAAATTATATGGTTTAAAAAAAGGCTAGTAAGTAATTCAGGTTTACCATAAAATAAAATAATTTTTCATTTATTCATTTTCCATCGGCTTAGTCCCTTTATTCATCAGGGGTCGCCAGAGCGGAATGCACTGCCAAATTATCCAACATATGTTTAATACAGTGGATGGAAACACCCATAGACGATTACATCACACAGTGATGTGCGCCGATTTGTGCGCCGGTTTCAGACATTGCCAGGGATATAATGTCATTTTTGGCGAACAGGGGAGATATCCGCGAACGCCAGAAAAAAAAAACTGCAGAATGCATTACAGGGGTATATTCACAACATAATAGGCAACCGTTTAGAGAATAAATCAATCAAAATTGAAGCTAGCATAGCCTAGCCGCCTCATACGCTAACCATTCAACAGCTTACCTCATGCTCAGCAAGAGAGGTGAAGTTTAAAAATAATCTAATAATAATAATAAATGATACCGTGATTTCTCTATTTTTAGTCAAAAATCCTGATAGATTAATAGGTGTGCAATGAAATATAGCCTTACAAACCGACGGGGAAACATGCATGACAGCGCTTTTACATAGTTCATTCATAGAAAGAACAGCCAGAAAGGGAGGCTGATGGATTTGTGCCGAATATTAGCATCATTGACCCATAACAATGTACAGTAAGTTACCTATCACAGTCAGTATGTTTGTGTACTCTTTATAAATGACTGAAAAACAGCTGGGGGTAAAGTATATTGATCGCAGCTGCTCAGTTTGTGATCATATTTTTGTTTTGTTCAGTTGATTTGTAATTTCAAATATTCGTAGCTTGAAATAGATGGAAATATTAAGTTCAGTAAAGTTAGCAACAGATTCGCAGATCCGTATTTTCTGGATCAATAACTCATGTCATTATGATCTATTCGCTATTAGTATGACTTACATTACTAACGTTATGGCGAAGGCTTAAACGGAGCATAACTCATGAAATAGAGTGAAAAAAAGGAATAAGACAGCTGGGAAACATAACCAGCTTTGTGTTTTTGTAGGAAACACAGTTTAGATCTGTTTAGTGTAAGAGGTGTGTGAGTTATTGCCGCCTGTCTATCACTGAATGTGTCAGGAATATCAAAACAAAACCAACTTAGCTCCGCTCCTTTAGTGCCCCTCATAGAGTTTGATCCACGCTGGCATTTCTCCTCTTGGGATTTAGGTTTTGAAACTTCATCCCGTCCAAACTTCAAGGAGACCGAGTATCAGATTTGCACAATCGATATGCACTAGCTCGAAAGCTTGACAGAGCCCCTGCGCGTAGCTACAGTTGCTAAGCCATGATTGGTGGATGGCGTTTTTTGGGCGTGGCTTAGCAAAGGGTCAATTCTACTCATTTGAAAAGAGTTTTGAACTCAGCGTTCTAGGTAATGAGCTAATTAAATACCTCATTACTTCAAAATAAGTTTACAGTACTCATAGATTAGTTTTTGAACTTGGTTTGTTGCAATCGATTTCCTCAAACAGTTTGAGTTGCCTTAATTTATTGGGTTTTACAGTACTCAGTTAGTTTGATTTCTCTTCATTTATTGGGTTTTACTGTCCTCAAATTGTTTCGTTTACTCAAATAGATTAAGTTCACAGTACTCATTAGGATTAGTTTTTGAACTTAAATGGTTTGTTGCAATCGGTTTCCTCAAATGGTTTGAGTTACCTTAACTTTTTGGGTTTTACAGTGAAGTGAAGTATGATTTTCAATTTTGGATAAACTCTCTGTTTACCATTACAATAATAGTCAGCTTATTGGCTGTCCTACATTACTCTGTTGACTGTATCAG
Seq C2 exon
GAGTTGCCGGAGAAGTGGAACAGCCTAAAGAAGTTTGCCTGGACAGTGAAACATGAGGTTGCTCCTCTTCATAATGCGGAGGTGGTTATCATCCGCAGGAAGTGTGTAGCCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384:ENSDART00000148294:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]