DreINT0058241 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21422522-21422990:+
Coord C1 exon
chr1:21422522-21422783
Coord A exon
chr1:21422784-21422866
Coord C2 exon
chr1:21422867-21422990
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CATTGAATTTGTTCTTTTAGGTT
3' ss Score
10.62
Exon sequences
Seq C1 exon
GACAGACTGGGCCAGTGCAAAGCAGCTCCTGGGAGATGGCAACTTCTTGAAAAAACTCATGGACTATGACAAAGACAATATCAAACCTCAGATCCTCCAGAAGCTACACAAATACATTAGCAATCCAGACTTTGTGCCTGAAAAGGTGGAAAAAGTGTCCAAGGCATGCAAGTCCATGTGCATGTGGGTGAGAGCCATGGACCTGTACTCAAGAGTTCTGAAAGAGGTCGGACCTAAACGAGAAAAGCTGGCTGCTGCTCAG
Seq A exon
GTGAGCCACTATCAAATTATGTTTGCATAAGGATGTTTACTGTGTATTGTTGTTGCCGTTATTCATTGAATTTGTTCTTTTAG
Seq C2 exon
GTTGAGTTGGATGCAACAATGTCCACTTTAAAAGAGAAGCAGAATAAACTTCAAGAGGTGGAGAATCAAATCAAAGTTTTGCAGGACCAGTTTGAGTCCAGCATGGCTGAGAAAGAGACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(26.0=100)
A:
NA
C2:
PF127772=MT=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGAGCCATGGACCTGTA
R:
CTGGACTCAAACTGGTCCTGC
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]