DreINT0058352 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10362896-10363330:-
Coord C1 exon
chr6:10363203-10363330
Coord A exon
chr6:10363124-10363202
Coord C2 exon
chr6:10362896-10363123
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
GCTAAATGTGTTTCTTCTAGAAC
3' ss Score
7.21
Exon sequences
Seq C1 exon
GTAAAAAACTTGGCTTCACTATAGACCTGGGGAAGCTTCATAATGTGTCTCTAGGGCAGGGCCAGGAATCTGTGGCTGAACTTGCCATGGAAAAGGCCTCGAGAGAAGGCCACTGGGTCATTTTACAG
Seq A exon
GTGTGGGTTTGGTGTTTGCTACTTGTATAGCGTGTATTGCGTTGTTTTATTTATATTTAGCTAAATGTGTTTCTTCTAG
Seq C2 exon
AACATTCACCTGGTGGCAAAGTGGCTGGGAAATCTAGAGAAGCTTCTGGAACATTGCTGTGAAGACAGTCATCAAGACTACAGAGTGTTCATGAGCGCTGAACCCTCACCCACTCCGCAGGAGCATATCATTCCACAGGGAATTCTGGAAAATTCCATCAAGATCACTAACGAGCCTCCCACAGGCATGCTGGCCAACCTGCACGCTGCTTTGGACAACTTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAATCTGTGGCTGAAC
R:
CAGCGCTCATGAACACTCTGT
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]