DreINT0065652 @ danRer10
Intron Retention
Gene
ENSDARG00000036041 | f2
Description
coagulation factor II (thrombin) [Source:ZFIN;Acc:ZDB-GENE-030131-4606]
Coordinates
chr7:38482124-38484581:+
Coord C1 exon
chr7:38482124-38482435
Coord A exon
chr7:38482436-38484473
Coord C2 exon
chr7:38484474-38484581
Length
2038 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCTTTGTCATTCACTCTCAGATG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTGAGGCTGTTGTTCCTCCTCCAAAAGCTCCTACTGCAAAACCTGAGCAGCGTCATGTGATAAGCAAATGTCTGCCTGGAAACGGGGAGACCTACACCGGGGAGTTGTTTGTGACTCTGGGGCTACACACCTGCCTGCAGTGGAGCTCCGCAGAAGTACAAGCCTTGATTAAGAAGAAAGAACTTCTGCCTCAAGTTCAGCTGGTGAAGAACCATTGCAGAAACCCAGATGGAGATATGGAGGGTCCCTGGTGTTACATAAAGGCAGCAAGCGGAAACATTACCATTGATTACTGTGATTTAGAGTTGTGCG
Seq A exon
GTGAGTGAACAGTACTTTCTTTAAAACTTCATTAACCACTAAAAATATTCATATCCTTGCATTGAACCTAGGATCTCCCTTGAAAGGGAGTTCTGCAGCAGACTTAATTAATTAGGATTAAATGTCAGGATTTTAATGAGGCAAAAACACTTCTTAAATGTCAACTGTTAAAGAGTTAGTTCACCCCAGAATGAAGATTCCCTTAAAATACCATTATCATTTCTCAATTCCTTTCTTTAGAACACTAAAGGAAGGAATTTAATTTTTTTTTTTAGAAGTTGAATATTTTTTAATCATATCTGATAGGGCAAGCAGACTTTACATTTAATCTTTACAACATACTAGTATTTATTTTCTATATCTATTTTAGAAGCTAGTATCTTTTTTATCTTGAAATCATTGTCATGTTCAAGAAACCAGTCGGAGATGATTCACGTTTTATGACATGCCGTGTCATCCTGCTGGAAGTAGCCATTAGAAGATGGCCACACAGTGGTCATAAAGGGATGGACATGGTCAGCAACAATACCCTGGTAGGCTGTGGCTTTGCTCCATTGGTACTAATGGGCCCAGAGCATGAGAAGAATTTATTCCCCACATCATTACACCTCCACCACCACCACCAGCCTAACCCATTGATACAAGGCAGGATGGATCCATGCTTTCATATTGTTGATACCAAATTCTGACCCTACCATCCGAATGTTGCAGCAGAAATCGAGGCTAATCAGACCAGGCAACATTTTTTCCAATCTTCTATTGTCCAATTTTGGTTAGCTTGTGCTAATTGTAGCCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACTCGGTGTAGTGTTCTGCTGTTGTATCCCATCTGGCTCAAGGTTAGATGTGTTGTGCATTCAGAGATGCTCTTATGCTTACCTCGGTTGTAACAAGTAGTTATTTGAGTTACTGTTGTCTTTCTGTCAGCTCTTCTGGCCATTCTCCTCTGACCTCTGGCTTCAACAAGGCATTTGCGCCCACAGAACTGTCGCTCACTGGATATTTTTTTTTACCTTTCTCTGTAAACCCTAGAGATGGTTGTGCATGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAGATCAGCCCGTTTGGCAACAACAACCATGCCATGTTCAAAGTCATTTTGATGCTCGGTTTTAACTGCAGCAGATCGTCTTGACCATGTCTCCATGCCATAATGCATTGAGTTGCTGCCATGTGATTGGCTGATTAGAAATTTGCATTAATGAGCAGTTGGACAGTTGTAAAGTGGCCGGTGAGTGTATATAACAAATATGTACTAGTCACAACTGTATTAAATAATAACTCATAAATAGCCTATAAAAAATTCACCAGCAAATATCTAGTTGTCACTATTGAAACTGAAGTAATAAAATGCAATGAATTGATATTAGTGTCAAATGAATCACTAGTATCTGTTTAATTGGTAGTACCCGGTGAATAAATGCCAGTATCTTATAATAAGAAGTTGCAATTAATAACCATAAGAACAAGGTACCTAAAAATAAAAAAATAAACATTAGTAGCCTATTAATAATTGTTATTAAATAATAGAAAAGATCATCATAGTAGCTGAAGTGCTAGTAAAACTACTAGTGATGTGAAAATAAATAGTATGATTAGACTAAGACCAAATGTTAAAATGTTATGCCATACATCTAAGAGATTTCTGTCCCACAAGAACCAATCTGGTATGGTTGAGTTTCTGTTAATATATAATGTAAAGATTTTCTAACCAAACCTTGCATTAAACTCATGTGGATTTGTTTTTTAATCTCTTTATAAATGTTTTTAAGTATCAAAGTTTGGGGTGAATGAAGCAGGGCAAACATTTCTAAGATTTTATTAATATATATATTATGTTCAGAGTGATCATCAGTTTGAAATGAAATAAGGGTGAATAAAATATTATGGTAAAAAATTTACAAATCCTTAAACAAAACTTCATAAATCACACAGCACACACAGCATACATAATCCTGCCTTTGTCATTCACTCTCAG
Seq C2 exon
ATGCTCCTTTGGACAAGTTTGTGGAGGAAGGTGGTGGACGAGAAAGAACAACTCTAGACCAAAGGAAAGCTTTCTTTAACCCCCGCAGCTTTGGAAACGGAGAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036041:ENSDART00000052325:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0005113=Kringle=WD(100=77.1)
A:
NA
C2:
PF093965=Thrombin_light=PU(40.8=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]