DreINT0067435 @ danRer10
Intron Retention
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16447770-16448055:-
Coord C1 exon
chr10:16448005-16448055
Coord A exon
chr10:16447896-16448004
Coord C2 exon
chr10:16447770-16447895
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCCTCTCTCTCCCTGTGTAGATG
3' ss Score
11.97
Exon sequences
Seq C1 exon
ATCTAGTGTGCGAACGAGGATTTGCTCAGTCAAGAGGGGCTTCATGTGAAG
Seq A exon
GTGACAGTTTCATAGAAACGACTTTAACATAAACTCTGTTTTCTCTGATTTTGAATTATAAAGCTTACTAAGGTAAAAATGCCCACCTCTCCTCTCTCTCCCTGTGTAG
Seq C2 exon
ATGTGAATGAATGTGAGGTGTTTCCTGGTGTGTGTCACAATGGACACTGTGTGAACACTAGAGGCTCATTTAAATGTCAGTGCCCAGAAAGCCTCACACTGGATGTCACTGGACGCCTCTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896:ENSDART00000149104:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(15.0=33.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGAACGAGGATTTGCTCA
R:
CAACACAGAGGCGTCCAGTG
Band lengths:
170-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]