DreINT0068498 @ danRer10
Intron Retention
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34312085-34313106:+
Coord C1 exon
chr7:34312085-34312196
Coord A exon
chr7:34312197-34313011
Coord C2 exon
chr7:34313012-34313106
Length
815 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
3' ss Seq
ATTTATTTTGTCTCTTTCAGGTG
3' ss Score
13.46
Exon sequences
Seq C1 exon
TCTCGGCTGGTTGTGAAGACTGCTCTGAAGCTGCTGATAGTGTTTGTTGAATACACCGAGTCCAATAGTCCACTGCTTATTCAGGCCGTCAACATTGTGGATGGAAAGAGAG
Seq A exon
GTGAAACCCACATTTAATCTTCTTTCAAAATACTCTGAATTCATAAAGTACAATTTCTAGCTTTTGTGTTTCATCCTAAATGGAGCAGTAAGATCTTTATCTGACCTGCTAATATATTCATAGACCCATTTTAAAGCATTGCTTTTTGGTGGCTCACAAAATCAATAATTGGATAGTTCACCTAAAAATTTGAATTGTCCACTTATTACTCCACTTGTAGTTTCTTTCTTTTGTTGAACTGAAAAGAAGATAATTTGAAAAATATAGGAAACTGGTAGTCATTTGCTTCCATAGTATATTTTTTCCTTATGGAAACAGATGTCTACAGATTACGTGGAATCTGTAGAAATATCCTTTGTGTTTAACAGTTGGAAGAATGGTTTGCAACCAGTAATGTAAGTATTTTGGGTGAGTTTTTTGTTTTAGAAAAGATAGCTTTAATATAACTGTGAAACCTGACATTTCGTATACATCTGCAGAAAGTGTATGAAATTCTTTACTTATTTGACATTTTTTTGTTGTTGTTTTGTTTTAAAATAAAACATTAAGAAATTCTCATTTGTGTTAATCAGCTAGTTAATGTTACCATTGAAAAACGTACTGACCTGAATATGTTGCAATCAATAAAAGAAAAATGGTTTTGTTTGTTAGACCTACAATTAAATGGGTGATGCTGCAAATGTAGTAATAAAACAATTCTGGTCAGCTTGATTCTATCAAATGGTTCAAAACTTCAAAAAAATTAAGATTTTAATAAATGTTACAGTGGGCATGAATGCTTTTTAGAGAGCTCACATTTATTTTGTCTCTTTCAG
Seq C2 exon
GTGTGAAGCCTTGGACGATCCTTATAGACATTCTGTCTGCAAAGAATGGATCAGACACAGAGCTGCTCATCTACACCATGACCCTCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768:ENSDART00000073447:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCTGGTTGTGAAGACTG
R:
CTTGTTAATGAGGGTCATGGTGT
Band lengths:
206-1021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]