DreINT0068627 @ danRer10
Intron Retention
Gene
ENSDARG00000001976 | fkbp16
Description
FK506 binding protein 16 [Source:ZFIN;Acc:ZDB-GENE-050208-116]
Coordinates
chr18:25758546-25759104:+
Coord C1 exon
chr18:25758546-25758686
Coord A exon
chr18:25758687-25758799
Coord C2 exon
chr18:25758800-25759104
Length
113 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CTTGTTTCTTACTCTTCCAGGGA
3' ss Score
10.65
Exon sequences
Seq C1 exon
GCTATTCATGCTGAACTTTCCAAACTGGTCAAAAGACAGGCGGGGGAAAATGAGAGCCAGAACTGGCAAGCTAAACCAGCTCGAGTGTTCGGCGAAAACATTGCGCCCTTTCTGACACCTCCTCCCAAAAAGAAGCCGTTT
Seq A exon
GTAAGTGACTGATTACCACCTAGTGAGAGGAATAAGAGTGGTGGAAGAGTCCTTTTAAAATGTGCCAGAGTCCAAGCCCCTCCGTCGTTTGATCTTGTTTCTTACTCTTCCAG
Seq C2 exon
GGAATTTCTTGGAAGTTTCTGCTCGGAGCTCTGGTGGTGGCATTGGGCAGTTTAGTCACATCTGTGGTCCTGACCGCACGGAACTAGCTCTGTCGACTGACTTGCAAATTAACTACAAGTCTCACAAACTAACATTCCGCAGAACTGCCAAGGGACGAAGGGAAAAATGCACTGAACTGTTTAAAGAACAGTTTGGGCAGCTCTGCCGGTAGCACACCGACTTAAGCAAAGCAGAATGTACCCACAGAGAAAAGGGCCAAGCAAATGCATTCCAAATATCTGCAATAAAAACAGACTATTACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001976:ENSDART00000007856:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131811=TPR_8=PD(0.1=0.0),PF047957=PAPA-1=PD(47.6=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTGCGCCCTTTCTGACA
R:
CAGAGCTGCCCAAACTGTTCT
Band lengths:
250-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]