DreINT0070400 @ danRer10
Intron Retention
Gene
ENSDARG00000100250 | ftr41
Description
finTRIM family, member 41 [Source:ZFIN;Acc:ZDB-GENE-090507-6]
Coordinates
chr3:44843965-44844521:-
Coord C1 exon
chr3:44844288-44844521
Coord A exon
chr3:44844116-44844287
Coord C2 exon
chr3:44843965-44844115
Length
172 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TGGATTTGTGTTTTCTGCAGAGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CGATCTGCACAGACAGCAGTGGAGGACACTGAGAAGATCTTTACTGAGCTCATCCGCTCCATTCAGAAAAAACGTACTGAGCTCACACAGGTAATCAGTTCTGCAGAAAAGACTGCAGTGAGTCAAGCTGAAGAACACATGGAGTATCTGGAGCAAGAGATTGAAGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACAAACACAGGAACATGTTAATTTCCTGCAG
Seq A exon
GTAACAGAGATTGAGAAGAACAGCATCTTAGGGAAGTTGAGCATAATACTGCAGTAAAAGCGGGACAAATAGAGAAAAGTTCAGCAGAAAAAAAAAATCAGCAGCTGATTTCTGTCAGGATTTGATTATTGTGTGAAGTGAAGGTGATGAGGTGGATTTGTGTTTTCTGCAG
Seq C2 exon
AGATTTCAGTCTCTCCCAGCTCCTCTTGAATCTACAGATGGTTACTTCAGTTCTTTCTTGTGTTTTGATGCTATGAAAGAATCTGTCCATGAGCTGAAGAGCAAACTGGAGAATTTGTGCAAAGAGGAGATCAAGATGATCTTAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100250:ENSDART00000164710:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF121283=DUF3584=FE(42.3=100)
A:
NA
C2:
PF121283=DUF3584=PD(25.8=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGACAGCAGTGGAGGACA
R:
AAGAGGAGCTGGGAGAGACTG
Band lengths:
254-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]