DreINT0071888 @ danRer10
Intron Retention
Gene
ENSDARG00000079296 | gcga
Description
glucagon a [Source:ZFIN;Acc:ZDB-GENE-010219-1]
Coordinates
chr22:11596077-11596332:-
Coord C1 exon
chr22:11596277-11596332
Coord A exon
chr22:11596194-11596276
Coord C2 exon
chr22:11596077-11596193
Length
83 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGGTCTGGTTTGATTTCAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
ATAAGCGAGGAGACGATCCAAACACATTTCATATCATCTCATCCATCCATTTGCTG
Seq A exon
GTGAGTTCAGAGTCTCTTTTAAATGTTTTTTTAGATGTTGCTTTCAGACGTGTCTCATTTTGTTTGGTCTGGTTTGATTTCAG
Seq C2 exon
GTGTGTGTTGGAAGACTCAGCTGTTAAAATGAAAGGCGTCCAGTATTTTGCCAGTCTTCTTTTGCTCCTCTTTGTTCACAAATGCATTTGCGTCCCACTGCAAGGCGACAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079296:ENSDART00000063133:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGATCCAAACACATTTCAT
R:
CTTGTGCTGTCGCCTTGCAG
Band lengths:
164-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]