DreINT0074444 @ danRer10
Intron Retention
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10522754-10523520:-
Coord C1 exon
chr6:10523383-10523520
Coord A exon
chr6:10523039-10523382
Coord C2 exon
chr6:10522754-10523038
Length
344 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
GGTTTCTCTCACTTTCTCAGGGG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GCTGGCGGCTCTGTGTGGTTTCAGTCAGGAGGAAAACCTTGAGCCTTCTGCTGTTCCTGAGGAAATTCGACTGACCTGCACTCAGTTTGTGAGATACCACAAAGATCAGTGCGTTCAGGATATTGTTCGCAACAGAGG
Seq A exon
GTGAGAAATCAGGAACAAAATGTCTTGATGTGTTTTTTAGGCTACGTTCACACTGCAAGGCTTAGTGCTCAAATTAAATATTTAGAAATCCAACTAAAATAAACTGTCATATAGGATTTCACTTCGTAAAGGACTGGCTGAGATGCTCCAACAAACTGAATAGTCCCTCAGAAGACACATCTTAACACTTTTTTTTTGTTAAATTATGTATGTATATATATATATATATATATATATATATATATATATATATATATATATATTTATAAAACACACACCCCATTTAAATCGTTTGACATTTTCCTGTGTTTTTTCTCTCTTGATGGTTTCTCTCACTTTCTCAG
Seq C2 exon
GGGGTCTACTGAATCTCTCAGCAGACCTGTGGGTGAATCCTTCCTTTGATTGACAGGAGTCACTGTTATTTGAGCAGTGCATTCATTGGCTTCCTCTTGTATGTGGGTGTGGCTAAAGTAAAAGTTGTGGCTTGGCTTTCAGGACACAGTCGCAGAAGAACATCCTACAACACTCGAGTCTTCAAACTACTTGTGATGCTGGCTCATAAAGGGATGATGTGCTCAGTGTCTCCACATTTGTGATGTGACACAAGCCCAAGCTGGAACTAAATAGACTGAATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086:ENSDART00000151714:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTGCTGTTCCTGAGGA
R:
GCTTGGGCTTGTGTCACATCA
Band lengths:
357-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]