DreINT0074450 @ danRer10
Intron Retention
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10530991-10531480:-
Coord C1 exon
chr6:10531397-10531480
Coord A exon
chr6:10531112-10531396
Coord C2 exon
chr6:10530991-10531111
Length
285 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TATTTTTATCTGTTCTGCAGCTC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GTTTGGACCCTTGCTGTCATGCTACTTAGTAAGAAGTTTCGGAGGATGCCACATATGTTTGCCACAAATCTGTTTTTAGCACAG
Seq A exon
GTACATAATCTATACATACATCTCTTTCTCTACACACAGTTGAAATAAAAAAAAAAACTGGAAGGAATTTTTCAAAGCATTTCCGATAATATTTTTTCCTCTGGAGAAAGTCTCATTTGTTCTATTTCAGCTAGAATAAAAGCTCTTTTTAATGTTTTTAAAAAATATTTCAAGGTCAATATTATTAGCCCCCTTAAGCTATATTTATCTTTTTATTTAAAAAGTCCTTTACCCTTAAAAAGTCATCAAACTAAAATGTGATCTTTATTTTTATCTGTTCTGCAG
Seq C2 exon
CTCCTAGCTTGTATGTCGATGCTCTTTTGGAAGTTTGTCCTAAAGCAGGGCAGCGTATTTGGCCAAATTCTCACCTTTACACTACTTTATGGATCTCTCTACAGCACCTACGTGTGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086:ENSDART00000151714:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGACCCTTGCTGTCATGC
R:
ACGTAGGTGCTGTAGAGAGATCC
Band lengths:
196-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]