DreINT0075876 @ danRer10
Intron Retention
Gene
ENSDARG00000069538 | gtf3c4
Description
general transcription factor IIIC, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-041008-147]
Coordinates
chr21:17382797-17388021:-
Coord C1 exon
chr21:17387733-17388021
Coord A exon
chr21:17384519-17387732
Coord C2 exon
chr21:17382797-17384518
Length
3214 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AAGTTTTTTTTTTTCCACAGGTG
3' ss Score
10.87
Exon sequences
Seq C1 exon
AAACAGTTCTTCAGAGAAAGCAGGGACCGCGTCTGAAGCCCCGTCAGGACCGGAGGATGATTTTTGGGCGGGACAGGGACCAATAGTGCTGCGGGATCCTGCGATTAAATTGTTGAGTCCGGTTAGCGGTGTGGAGCCGCTGTCGTGGGCAGAAGATCACAGACTGGCGGCCTGCAACACGAACAGCGTGTCTCTGATGGAGCTGGTGTGTGACATACACAGTCTCAGTCAAAACCTGGTGCTGCATCGCACTCACATCCCCGTCCCCACCACCACATGTGAACTCAAG
Seq A exon
GTAAATACTTCACTGCGCGCGCGCGACTTCTCCTCGCTTCATGGTATCATCACTTGTTTTGAATTTGTTGCCAAAGCTTAAGCCACGTTTGACGTGACATGACAGCTTAAGATCTTTAAAAAAAGCGTTAATGGTGTGGACGATTATTGTTTTAATTCTGATTTTCAACTGTACACTTTTTTATTTTACTTTTCATGACAATTTCATTATACTAACTACGCATAAATTAAGCCAATACAATAGAAATATGCAATCATGAAGTGACATTATTTTAAAATGTTAAGTTAGTTGTGGGCTTTGGCTATTCAAGATCAAATGCATTAAATTTTTGTCTGCCTGTTTGAATGTAATGCAACATTACTGGAGATCAGCTGTATTGTATTTTTAGTCAGTCAGTGATTTATTTATTTTTTTCCTCCACATCTTTTCAAAATGGGGCTCTATGTTTCCCCACGGGTCATAGTTGTGACCACTAACATATTTATGTGTTCTGTGATCATGATTTATGGGACAGAGCGATCTTAATTAATGATAGGCGTTTTAAATATTATATGTATCAAGGACGCAGTTGAATCTGTATCATGACATGTATTTTAAATGCTTCTTTTTACTTGAGCTTTAACACAGACTTTGTCTTCCAAAGGGGAAAATGACATTAAACAGCTTTGGGCATGCTACTATTTATACCAGGCATGAAAAAATGCTCCCATCAAGTAAAGACAATCTGCACTTCTATTTATAGCTGACCATAATGTGGAAAATCCATCAACTGTTTTTAATTTATTAAATACGATTTTTTTTTTACAAATCAGGTTGTAATGCTTGCGATTAAAGTATATCTTAAAATGAGTTAATCTACTGTATTTAACTCTGTTTTTGACAATAGTTAAAAATAAGACTTTGTTTTATTGAGCCGCTTTTAAGTTTTAATATTTAAAGTAATATTTTTAGTACCTCACACTGCTGTCGGACATCAAATAAATGCAGTTGATCTATTTGGTTACCTTTGGCTCCATATGTGTGATAAAACTAAAAATAGGCTTCTTACAGGCAAAAGAAAATATATTTTTCATGCCCTCATTTACATATTTTATGATAAAAAGGTTTAAATTGTTGACACTTTAAATAGTTATGTTAATTAATAAAAATTAAATTAACTTATTTCCTGATATAAAGCTAAAAACTGTGACGTTCATTCGTTCCTTATTTATCAGGGGTCTTCACAGCGGAATGAACTGTCAACTATTCCAGCATTTGTTTTACATAGCAGATGCCCTTTTAGCCGCTATCCAGTTCTGGGAAACACCCATACACTCTGACATTCACACACACACACACACACACACACACACGCACACACACATACAGACACACACACTAATACACTAAAGCCAATTTAGTTTACCCAAGTCACTCATACCGCATGTGGGCACATGTGTTTGGACTGTGGGGGAAACCGGAGCACCCAGAGACCCACACAAACACTGGGAGAAACTCCCCACAGACATACTGTACCAACCAGCCCAGCCAGGACAACCTTCTTGCTGTGAGGTGACAGTGGTAAACACTGAGCCACTGTGCTGTCCTTTGTTCACAACTTATATAAAGTGGGGCTGTGCAATTTGGGGAAATTATCTATTTGCGATATTTTTTCTATTAATTTTTTTTTACAGATATTGCGATTTCGATTTAATTTTATATCGTAGCTTCTTACTACTAAAATGCAATGAGTGTTAGTTAAAAAAAATGAACTGAAAAAATGTTAACTTAAACTTTTATTCATATTTGTTTTTAAATATTCAGAAATGAGGCACATTTTTCCATAGAGCAAACAGAAAGCACAAATAAAACGACCTTACCTTTCTGTAAACAAGTTGAACTCAAATTAGGGATATAGTGTAGCTTATTATACAAACAAAAAATAATAGTTCTGAAAATACAGAACACTCAGCAAACTAATTTAAGTGTATATGACCTATTTTGCATTTAGATGAGTTTTTTTAAATCCCTCTTTGGTCACTGCATTAAAAGGAACCATGTCTTTAGCGAGGTGTTGTGTTATGGCATTAGTTATCTTCTGGGTAGGGTTGCATCAGCTGTCCTTTAGTTCTTTCTTCTCTTAAAGGTAAAGTCCCCACTTGGGGCTTTGTAACTACTAGCTAGTTTGTAACTAAATTTGTAGACATGTTCTTAAACCATACCGTAATTGGTAGATTGTAAGCTCTCCGTAAAGTCATGTGTATAGTCGCACTGAATGACGTAATATCCAATAAGAAGCATTTAAATCATTTAACTGCTTTAAAATTCTGCAACTAATGCATCTATATAACTGTCTTATGAAAATGAAATGGCAAATTATATTTGTATAGTACATTACATTAGTCAGTCACTCCATACGACGCGCATATCTGCATCAGGAGCCGTGAATCATACTATGCGTACTCATACTAAGCTATCTGAACCGCGCCCAGGCCCGTTTCCTGGATCGTTTGAGAAGTGTGAGTGCTCTGAATCGGTTGGCCGGTCCTGGCCCGGTTAGAAGAGGTGTGCCAAAGTGCGGTTCACTTGAGCGGTACGCTTGTATTATGCGTGCAAAGCGCGCCTGAGCCCGAAACTGAAGACGAGACTTGACTTTTAAGGGACTGTTTCATATGGATTTATTAATCATTCTTACTGTTTAATGAACTCAAACTGTTGTAGATTATTAAAGAAGCAAACCCCTCACTGCACGACAGCTGCACCTTCAGCAAACCTTCTAATTCCTGCAGCACGAGCACTTTACGATTGTTTATGAGCATCAAAAGTGGCTGATCTGTTCAGGGAAATACTTGACCGCTTGTCACTGCATCTCAAACAATAGGATATAAAGAAATTTCCACTGTGCTGAGCGAGAGAGCACTAACTAAACTGCGCATCATCGATTAGGTAAGCGTGCTCAGGCCCGAATGCAATATGAGTGTGGGACGTCAGGCGAGACGAGAGGGGGACAAGCGTACTTTTGCCCGATTTAAGGCAACTGTACATAGTGTGAGTACGCCCTAAGACACATGTCACACACAGATGCCATGCACACATTTGCTCTGCGTGGTGGGAATTAAAAACTGCATATTTTATATCACAGCTTCTTGCGCTAATCGCAACATTTCAAATCGCGATTGCGATTCGACTTTGATTAATCGCACACCCCTAATGTTAAGTTTTTTTTTTTCCACAG
Seq C2 exon
GTGGGCTCAGAAAAAGATGTGAGGGCTGTTAAAGAAAGCTTTGCCAATAGTAAAGACCCAGTAGTAAGCCAAATGATCATGATAGACCGAGTCATCAATCCTCAATGTGGACCTCTCCATGGCGTCAAGTACACTAGTTGGTCACCGTTAGGCTGTGACAAACTCGGCCGCTGCCTTCTTGCTTTCCTAACACTTGACAATCGTCTCACAATCCACAGCAGTCACTTGCAACTGCAGTGGACGCTACTGCTGGACCTTACAGAACTATATGGCGAAATGTTAAAAACCAGGAAATACTCCGCTCAGAATGATGGCACACCACCGGTCTCCTTTAAAGACTTCGATGAACTGCAGCGTCGGTTTCGTATGCAGACACCAGTGCGCATGGAGTGGTCCAGTTTGTGCAGTATGCAGCAAGTTCAGAGCGATAACGCTCATAAAGATATCAACACAGTTCTTCTAGCTGTACTCATGGAGAATGGAGACGTGGTGGTGTGGCAGTTCAGCTTGCCCCTAAACGGAAAGGAATCAGTGGTGTCATGCAGCACCATCAAATCTGGTGTGTCGTCACCAAGCGCGCTCACCTGGTGGCAATATGAGCACGGCGGGCGGAAAATGAGCGGACTGATCATAGGGAGCTCCGTAGGACCTGTAAAGATCCTCCCAGTCAACATTAAGGCAGTGAAGGGTTACTTCACCCTCAGGCAGCCTGTGGTTTTGTGGCAGGAGAGCGACCAGATTCCTGTCCACAACATCAAATGCATCACACTCTTCCATCCGCACCAGAAATGCAACTGCAGTTTAGTGGTTGCGGCACGTGGTCCGTATATCTTCTGGTGCTTACTGCTGATCTCCAAAGCTGGTCTGAATGTTCACAATTCCCACATCACGGGTCTTCATTCCACCCCTATCATATCCATGACGGCTTGCCACAATAATGGGACTGTTTTAACATGCTCACTAGATGGGAAGGTTAAGAAGCTAACGACTGTTTTCACAGACCTAGCTGTCGAGTTCAAGCAAGAAGAGATTGTTCTGCCTGAAGGAGTCGCGGGTCGACGGATACACGGTATATCAATCAGTCCAAACAGTGCCTACTTGGCTGTTCTCTCCAATGAGGGTATGAACAATGGCTTCCATCCTGTCGCTCTCAACTACCAGGTACAGTTCATCACCTTTAAGACTCCAGATGAAGCGGCAGCTAAGATGCTTGATGCTCACTGTCTCTTTAGAAACTCTGATTTGCTGGATTTGTTACGATGGCGGATACTAAAAGACAAAAGCATCCCTTCGGCCTACGAGAATAATCTAGAAGAGAAGCTGCAAACCTCAGGGTCCACTTACCTGTGGCGTCTTAAGCTTTTCTTTCTCAGAACGCTTCACAAGTCCATGCAGAAAACTCCTTCAGAGGCTCTGTGGCAGCCAAGGCGAAGAAGTGGTCAGAGTTTAGTTGGTGATGGTGATGAAGGGGGTGGAGGTGATGAAGATGAGATGATGGAGGACAGACAGGGGGATGCAGAAATTAGGGAAAGAGAGGAGAGAATGAAAGAGATTGGCAGCAGGATCGAAGCTGTGGAGTCCCATCTGATCCGGGAGAACATGAAGAAGGTGCTGGGCGAGGTGTATCTGCACACCTGTGTCACTCAAAACACACGTGTACCCACTAAAGGTGTGTGTGACTTCCTCACAAATGACCCTGCTAATGAAGACAGGGCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069538:ENSDART00000101295:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PU(15.8=80.6)
A:
NA
C2:
PF126572=TFIIIC_delta=PD(82.9=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]