DreINT0075878 @ danRer10
Intron Retention
Gene
ENSDARG00000069538 | gtf3c4
Description
general transcription factor IIIC, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-041008-147]
Coordinates
chr21:17380076-17382562:-
Coord C1 exon
chr21:17382432-17382562
Coord A exon
chr21:17380165-17382431
Coord C2 exon
chr21:17380076-17380164
Length
2267 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTCCTTCTTCCTCCCCAAGGTG
3' ss Score
10.39
Exon sequences
Seq C1 exon
GTGCTGATAGGTCATATCATGAATAAGATGAATAAACAGACATTTCCAGAGTATTGCGCTCTCTGTAAAGAAACTCTGCCCTTCACCGACTGCAAGCGGGCAGAGTGCAAGAATGGACACAGGTGGCTCAG
Seq A exon
GTACAGCTAATATATCATGCTATCTATGTGGTATAATGATAAGGATTTAATAGTAATTCATTTAAAATATAATAAACATTGATATGACCGATTATTTTATTAATTTTAATGTATAAAATCAGCTAAGCAGGGCTGCACCCGGTCAGTACCCCAGACTCGGACTTAGCAAGGTTACTGCCAGAAGTAGTGTTAGTGAGGCCAGCAGGGGCGCTCAACCTGCAGTCTGTGTGCGTCCTAACGTCCCAGTATACTGATGATGCCCTGAGCGCTGTCTTTCGGATGAGATGTTAAACCGAGGTTCTGGCTCTCTGTGGTCATTAAAAATCACAGGATTTTCTTCGAAAAAGAGTAGGGGTTTAACCCCAGCTTCGTGGCCAAATTTGCTCGTGGCCTCTGTTTATCATGGCTTCCTAACCATCCACATATCATAATTGGCTTTATCACTCTGTCTCCTCTCCACCAATCAGCTGGTGTGTGGTCTGGTGCAATATGGCTGCCGTCACGTCATCCATACGGATGCTGCACACAGGTGGTGGATGAGGAGATTCCTCCAAAAATGTGTAAAGCCCTTGTATCCAGAAAATCGCTGTTTAAATGTAAGGAATTAAACATCATTTAAAACAATGGACAAGTGCAGTCAATGCCTTTTATGAATATAAAATACATTTTTAATTTATTTTATCAGGGTGTCTGCAGGGTCATAAAGTCTTAAAATGTCTTAAATCTCAAAATCAAAATTTTAGGCCTTAAAAAATCTTAAATTTGCTGAAATATTGTCTTGTAGGTCTTTTAAAATCTTTTTAAAACCGGTCCTAGTGTCCTTTGTTCATGTATTGCTACCCAGTCTGGCCAACACCCATACAACAATTCATCTCAATAGATAATGGTTTAATTATTTTCCTTACAATTAACATTTGTTTAAAAGTGCTCCATGTTTTTACTGCTGAGGACACCGACCTGGACAGAGTGTTGTGAGTAGAGTTCGATTATTATAGTTTTTAAAACATTTGTTTACTTTTTTTATTTTAAAGAAAGTTTGCTGAAGAAAAAGTGTATGGACACAAGCAGAGCTTGCTTGTTTTTACACAATACTTTAAATATTTTGCTAAGAAATTCATTCATTTTTTTTCTTGGCTTAGTTCATTTATTAATTGGGTCGCCACAGCAAAATGAACTATTAACTTATCCAGCATATGTTTTTTATGCTGCAGATGCCCTTCCAGCCACTACTCAACACTGGGAAACCCATACACACTTGCATTCACACATACAATACGGGCAATTTAGCTTATTAAATTCCCCTATAGAGCATGTCGTTAGACTTAGGCTCAGAACCAGTGCCACCGTGCCATCTTTGCTAAGCAATATCAAAACTATAATTTTTTTTATTATTAAATTATTATTTTAAAATTAATTGTATTAAATTATGATTATTTTTTATAGGGCAAATAAAAATCTTTACCAACTGGGCCATTTAAAAAAATTCCTCAGCTTTTAGCCCTTTATGAGTCTAAAATTTCATTCATAATGGTCTTAAAAAGTCTTCAGTTTAACTTGTATAATGTTAACTGTATATAATGAAAAGTAAAAGCTTTTGCTGTATCAAATTAATTCTTAAACTGTTAACAAAAAAGATCCATTTCATAAAGCGCACAGTCTTGCATTGTCCCTATTTAGACATGCAAATGTAATCATTTTACTTGTCTCTTACAGCTGCTTTAATAACACGTATTTTGCAATGCCAAGTATTTTGCTGTTGCACTGTTCTTGGCTCATAACTGACACAGCCTGCGCATTTTAATGAACAGATTAATTTAGATATTGTGTATTGCTAGGTTTAATTCACACCACTTCACAGCACATAATCCTTCATAATAAAAGAAAAGAGCTGGTGGGCTCTTGTTTTGGCTTTTACAATATTTTTGTATTCCCAGATTAATGTGCGAATATCATTTTTTTTTTAAATCCTCCAAAATCTGTCAATAATATAAAGTAAATTTGACATGGTATAAAATCTGTACTATATGTAGGTGCTGAATAGATTTTGAGCCGATTTACCCATTTTCGAGCCCCATGTGTGACATTTCATCCATTGGGCTGACTGAAAGGAGATTACTGCCCCTAATGGTATATCAGGGAAACAGTTGCTTCATTGCTGTCATTCTGATTTCTGCCAAGTACTGATCTAAACCTTCCCCTGCCGTTTCTGTTCATGTGTCTCACTGTCTCTTTCCCTCTTTCTTTCTCTTTCCTTCTTCCTCCCCAAG
Seq C2 exon
GTGTGCGCTGTCATATCAGGCCTGTCAGGGTGTGACATACCGCCGCTGTCTATTGCAGGACAGTATTGCCTCAGTAGCAGAGCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069538:ENSDART00000101295:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF126602=zf-TFIIIC=PU(43.3=88.6)
A:
NA
C2:
PF126602=zf-TFIIIC=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]