DreINT0075888 @ danRer10
Intron Retention
Gene
ENSDARG00000067979 | gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-060810-66]
Coordinates
chr21:11287699-11287956:+
Coord C1 exon
chr21:11287699-11287781
Coord A exon
chr21:11287782-11287873
Coord C2 exon
chr21:11287874-11287956
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTGTTTATACTCTCTAAAGGAA
3' ss Score
6.54
Exon sequences
Seq C1 exon
TTCCTCTACCTGCTAGTGTGACAGACATCCCCCAGGAAAGTACTTCATCTTCAGGACCTGTCACTGCAAAGTACATGCTTAAG
Seq A exon
GTATTTTCTGAAGTTTTATTTTTGCTTTAAGTGTTTGTTTTTCCTTGATCAGCTACTAATGTTTAAACTCGTTTTGTTTATACTCTCTAAAG
Seq C2 exon
GAATCCATCTACATCTTTCGGGAAGGAATGCTTCCTCCATACCGACAGATGTTCTACCAGTTGTGTGATCTGGATGTAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067979:ENSDART00000091835:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTACCTGCTAGTGTGACA
R:
TCTACATCCAGATCACACAACTG
Band lengths:
162-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]