DreINT0077343 @ danRer10
Intron Retention
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58616203-58618760:+
Coord C1 exon
chr6:58616203-58616356
Coord A exon
chr6:58616357-58618592
Coord C2 exon
chr6:58618593-58618760
Length
2236 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTTTGTTTGTTTGGCTGCAGGTA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTGCGGGTCGCCATTCTTTTGACTGAGGCTGGGATCAAGACAAAGGACATTGCCATTCTCACACCATATAATGCTCAAGTGGCCAAAATTAGTGAGTCTCTGCATAATAACCATATACGAGACATCACCGTCAACACCATCATGAGGAGTCAAG
Seq A exon
GTAATAATCCTTCAAAAATCGAATTTTACATCAATATGTTCGCTTTGAACATTATTAAACATGACACAGCTAACAGTTTTAATGTTCCTGGATTTATTAGCCATGGGTTTGAGTAAACTGTTAATATTTGTTTTATTCTTAAAAGGTCTGAAAACATTTCTACCAAATGTCAATATCGTCATTTAGTGCATATTGTTTCCCAGAAAATTACATACAGATGCATGGTTTCCGCTACATTCATTCTTCCGTGGAGGGGCGCCACACCAAAATTCATTTCGCCACGGCTACATTACAGCTTCTTATTCAAATTTTTTTTCGTTTTTTAAATAGTGGGTTAAAATCGCACCGAAAACGTATGAAAAGGTAAGTGAATAATAACAGCGCAAACTTTTCTGTGACTATAGCAGTGCTGTGCGTTCTGTTTAACCCTTTAAGGTGACGTGCTGACTGACTGACTGACTGACAGGTGTGTGATGTGTGTGGTCAGCAAACACGGCGTAGCTTTCAGTTACGATGAACAGTTTCCATAATTATACTTTATTTATAGATAAAGGTCTGTGGCTCTGAATATAATGACTTTATCTTGCTGGAGTTTATAGCCGTTTCACTTTACTTCAGGACGCATTAATGCCGCGGTCCGCTCCGCAAGTCTATCGGAGACATTCATAAATATCCCTAGCAAATCTAATACATGTTGGAGACATACTCGCTACATAAACGCACTAAATCACACTTCAGCCGCGTTTATTTGAGGGAGTGCAAGAAAATCTGCACTTGAGCAGCGTATATTTGAGGGCGCGCAAGAAGTTTTGTGCACAAGCAGAGGAAATCGGCGCTCAAGCGGAGATTGACATGCTCGTAGGCTATTACATGAATGCGATCTTGACGTAATACTGCGCCCATGACATTTGTCAATGAAATAACGCCACATGTACTGGTAGATCTGTGTAAAATGGCCTACAGAGTCTGCCTCCAGAGCTGGAAAAAAATCCTAGAGGAAACACTGAGATGTCACTACTTCAATTTGTTCACTTTGGCGCCGTTCATACTGCGACGGTGGCGGTAGTTGGTGCGCCTGCAGCTTTTGACTGCTGGGTGGCGCTTTAACCTCATATTTTCAGCTTTGCCTTTTCACAATACTAGATACAGTTGACGGTTCTGTATGTGCACCTTATGTGATGTGATGTGTTCAATTAAAATATCATTTTGTTTGACTTTTCTTAGTTATAAGCATGCTTTTACACTATACTGTATGTTTTAGAAAAGATACAATACATGGTATGAAGTATAGCACTTGGCTGCAAAAAGCAAATAATTTGTCGATGTAATTTGCAGAGGATCCCTAAAACTGCGTGCGCGAATATCAAACCTTAAGCCAAGTTTACTGAGCTAGGAGGTGATTGGTTTTCTAAAGTATTTCCCAGTTTACGCTCGAGGGCTCGTGCAGCTTCACGAAGCCGCTGAGGAACAGACTTCGCCATGTTTATGCTGCCAAATGTCCCAAATAGTCCTCGCTGCAGCTGTGACGACATAACCTAAAACCCGCCTTGCAGCAACGGTGGCCGTCTGTGGGCGTGGCTAGGCCAGAATGCATTTTCAATTACAAATCGGCTTTCATTCGTCGCGATGTGTTAAATGAAAATGCATTGTTTTTTTTATTTTCATTTTCATTCTGCAGCAAACATTGCACATATGTCTTGGAAAATGCTAACTGAAATACTGAAATACACTGCCATTTACATATTGCATTATCGTTTTGCGTATTACATTTCAAAATTAATTTTGCTACACACATCCCATGCTGTTATGCTGAAAATGTAATCCTGCGTTTCCTAGACGCGAGTGTAAATGCATTTAGGACAACATTTAAATGATCATTTTGCAACAGTTTCTGCTTGTACTTTATTCACATCAAATTCAGTTTGCGTATAGCATTTTCAATTTAATTTAGCTACTTATAAAGCTTTAAAATGTGGATACAATTTACATATTAAAACAGTGTTTGAAATGAGAAATGCAAACAATGTAATTTAATTTACATTTTCATTCTGCACCAAACATTGCTCATATGTCTTGGAAAATGCAAATTCAAATACAGAAATACATTGCCATTTAACATATTGCATTGCCATTTTGCATATTACATTTTGAATTGAATTATGCTACTCGTATGCTTCAATATAAATTATTTCAGTAGCAGTCTATTAATTCTGATCTTTTGTTTGTTTGGCTGCAG
Seq C2 exon
GTAGTGAATGGAGGTACGTCATCATGTCAACAGTGCGCTCTTGTCCCAAGTCTGAAATAGAGACACAACCACCCAAATCCTGGATTATGAAGCGGCTTGGATTCATCACCGACCCTCATCAAGTAAACGTTGGCATTACCAGAGCACAAGAAGGGCTGTGCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527:ENSDART00000154393:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(25.1=100)
A:
NA
C2:
PF130871=AAA_12=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]