DreINT0077349 @ danRer10
Intron Retention
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58587752-58592168:+
Coord C1 exon
chr6:58587752-58588133
Coord A exon
chr6:58588134-58591526
Coord C2 exon
chr6:58591527-58592168
Length
3393 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TAAATGCACTTTCTTTCCAGATT
3' ss Score
8.1
Exon sequences
Seq C1 exon
GGCATGAAATCCCAGTGTCATTCAGATCTGACCAGCCTGGCCTGTATGAGCAGTGGGTAGTGTTTGACTTCAATACGAGACCTGTACTTCGACAAAAACTAAAGGTCAGAGTTGGAGAGGATGATTGTCAGGCAGCTCCAGCACCGGAGGCACTATTAGAAAACCCAGAAGCTGCCTGCAATCTTGAGCCTTGGAATGAGGAAAGCATGACAATCATTCCTTTTGTTGAAACAGAAAAAGCACAGAGAGACCTACTAAACAGATACCAACTCATCATGATGAACCAGCAGATGAACGGTTTGATTAACCGTGAGAATTATAAATGGAGCATGCACAATTTTTTATACCAGGAGGAGAAGGTAGTCGGTGAACTGCTTTCCAG
Seq A exon
GTATGCATGTTTTAATATATATCATCAAGCCGAAAATTATTTGTACTCCTGGCAAATTCTGACTTTTAGTCACTTTTATTCAACCTGCAAGTTAGTAGTTTTTTGGGTTTTTTTTGCTTTTTTGACCGGAAATGACCCAGGCTTCTCCCAAAAGATAATAAGATGATGTACAAGAAGCATCATTGTAAAAAAATATTCAGCTTTTATTTACTTTGGAACAAAAAATGGCAGTCAGAATTTGCCAGAGATATGAATCATTTAGTGCTAAATTATTTTAAATTTAGTTTTTTTTTTTTTTTTTTTTACATTTTATTGTTATTTTAATAATAGTATATGCAATATCCGAATTGCAAAGAGGTGGGATAAATAAAACGTATTTTCTGTGTCAAGCATTAATGTGTTAGATACCAATTTAGATGGGACCTTAGTATCCACACTCTCAGAAAAAATGGTGCAATGTTGTACCCTAGAAGATAGAAACCCTTGTCACTGGGGCAGTATCTTTTTATAGGACAGAATTGTACCATAACACAAAGAAACTAATTTGTACCATTGCAGTTTGTACCTTTAAGCACACGATTTGTACCATGGGAAACCAAAATGTACCTTCGGTTTTTAAAACCTGCAGATACAATATTGTGCCTTCATCAAAGGTACAAATCTGATCGATGAAGGTACCACTGCAGTAATAAGACACTTTGTACCTTAACAGTCAAATGTGTTCCTTCAAGAACTATTTAAGGCATTTTGCTTTATCCAAAATGTGTCAATTTATTTTCACTAAATATAAAACATCAAATACATTTTTAAACAATGTTTTTTTTAAACAGTTTCTTTTTGTGTAAATGACCCTTTTCCATTTACAATAAAGAATACTTAAACATTAATCAAAAGATCTATTTTTTGCTAAACATTTCACATCTCTTTTCACCAAATTGTTACATAAATACATTCTCCCATGTACAATACACAACATGCTTTTCTCCAATTTCCACAATACCTTTGTAATCACTTAAAACTTCATTTAATTTACTTAATTTTAAAAATTGAAATCGAATTATGCATTGTAACAAGATATAATGTCCGGTTAGTTTTACAATAGTAAAATGTCTGCATCAACACTTTGCATATGCATGACGTTTGCCAGCTCACGTGCGTAGCGGAAAGCAAACGCCAAAAGGTGCAGATATTAATAATGAAAATGTATTTATCAGAAAATCTAATATTTATTAAAAATGCCTTGAATGTTTAGTTTACAATAGCTATAGTTTTGTTTTACCAGTTGTTTTGTATTATAGAACTTAATAATCATTGTTTATGACTTTCTTTAAACATGCTTTTAAATGATGATTCTTGTTTTAATATGGAAATTATTCATAAAATCACTTTGCCTTTACACTAATATTTATTTTCATAGATATTGTAATAAAGAAAAAGTTGTCCAACACTCACATACCTTTTTGTGAGAACAATTGTGTACCTTAATTTCAAATGTACCATAAAAGGTACAGAACAGTATCATAGAAGGTTCTTCTGTACCAAATAAGGTACAACTTTTACAAAGGTACAAAAAAGTTTCCTAAGGAACATTATTTGTACCACAGTGTACCTTTTTTCTGAGAGTGCAGTATCTGTTATGATATAGGCTAAAACAACAAGTGCAAAAGTAAACACTAATAGCAGTTGTCGAGACTAGAAAGGAAAATGACAACAGCCAACAAAACTCTGAATATCTGCAGAGGTTTTCACTCATTTAAAGTGCTTTAAAGTCTAAATGATTGCACCTTGATAGAGTTCTTTCTTTAGCCTGAGTTAGATTTAATTACATACTATAATGAAATGATTTTTTCAAATAACTTCAAATAGATATAAGAGAAATGTTACAATGCAACAAAAATAAACAACAATTGCATATTTTTTCCAGTCTTGTCCTAATATCTAATGGCTTATTTCCACTGAGTGGGACGATTCAGTGTAGTATACAGTACAGTATGATTCAGGACAGGTAACCCTAATCAGGATTGTGTCCGTATGACAGAAAGCTGAAATCAGCGTCATTTGTTAGGTGTGGTGTACACCAGAAAGTAGCGATCTAACCGATCGAAGGGCTGTTCACATACTGCGTCGGTTATGTGCTCAATATCGTTATTTCAAGAGTTCACACTTGACGATTGATTATAAAGCATGTTTGGCATGCTGTCCTGAGAGAGAGCTCATAAGATCCTCGAGCCCAGGGCTCCCTGTGAGAGTTGATCTACCTGAGCTCAAATTCCCCTGCTGTTTGAAGCTAGAGAACTATTAGGGATTGTTGTGTAGAGAAAACTTCACTAAAAGCACGTCTATATTTCTGATTTGGATTAGTCAATTAACTTAAGTTGCATGTTTTTGGATGGTTGGAGGAAACCGGGGAACCCGGGGGAAACCCACGCAAGAATGGGTAGAACATGTGAACTCCGCACAGAAACCTCAGCTGGCATGGTAAGGACTAGAACCAGTGATGTTCTTGCTGTGGGGCAACAGTGCTAACCACTGGGCTGCCGTGCCACCCATCTAGGAAAGGAAAAGGAGTATGGGTGGATGGGGGGATTCTTCAAAACGAAGATGACTATGGTTATGGAACTTTTTTGGTATGGTTATTTATGGAGACTTAAGAATCGTCTGATTGGTGAATCATAAATTGGATAATGTGGGACCAGCTGCAAGCAATCATACAGTAAGCACGTGATCATCTCGAAATGAGTTCATAAAAAAAACTTCACTTAAAATGTAGGTGTGCACTAAAAGAGAGAGGAAGTGGCGCCCCTTGTGTTTTACACTCATTTTTAGACTTGACATATGAACATCCCTGTAAACAACAATAATAATAGAGGACATAAAGCAGATCCTGTTCTTGCTTTTGGCATGTGGATGGTATTCTAACAATGAAATTGTGTATCACATAAGTGATTGATTTTTAGACTAGATACAAAGTTTGATTGACCTCTCCAGAAACCACAATTGTTTGAGACTCAAAATTGTTTGGACTTGTGATCTGGTTTCCTTTAAATGCACGTTAGCTAGGGGAACCTGAAAAATGCAGTTTTCGTTTGAATCAAATGTTAGACAAAAGTTAATAAACATATGTAAAATTTCAGGGCTTCTTCCACATATGAAATTCAATCATAAGCTTGATTTAAACACTTAAGGAAAATTTGATGTTTTCCTATTCAAAGACATAGGAGCGGCTCTTGCATACTTGAGAGGTGTTTCAGAGATGGCCGCTGAATAAAATGACTTGCCTTAAAGGAGTTTTTACCGAATTATACCACTCAGTGGAAATGAGCCATAAGTCCAGTTGAATTTGAATATGGCATTTTATAACAATTTAAACACATAAATGCACTTTCTTTCCAG
Seq C2 exon
ATTAAGTCTACGAGGGACTGTGCAGCTGAAAAATGAGTTGTCTGATGACAGGTTTGGAATGAAATGGGCTCACCCGGGTGAACTTTTTGCTGCTGTGCCTCTGTCTCAGCCACTCACACCTGATGCTCCTCAAGGTTTCATTGTGAAAAGACATGCCATCAGATCTCTTGTTCGTGTTGTGAAGAACAATGAATATTGTGGGCCTATTTATGAAGCTGAGTTTCTGAAAGATGCTGCCTCCGAGACACAAGTACATCTCCAGCTTTCCAAACGCTGCTGTGCTGCCCTTAACCTGCAGAATGGAGAGGAATATGAGATGGAGGTCCAGTTTCAAGTCAATCGTCTGTGGTTCTGCGAGATGCACAAGGCAATTGATGATCTCCCGAGGATGGACAAAGTGTTGCCTGATCTGAAAAATGCTCACCTCAGTATTTCTTTCCAGTCAGATGAAGGAGAGTTCAATGAGAAGCAGCAAGCAGCAATGGACTTTGTCTTGGGTGTGTCAGACAACAGAAGCAGCATCCCACCCTTGTTGATTTATGGACCTTTTGGGACTGGCAAAACTCGAACCCTTGCAAAGATGGCACAGGCCCTTGTACAGCAGCCACACAACAAAATCTTAATTTGCACACACACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527:ENSDART00000154393:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF130861=AAA_11=PU(31.8=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]