DreINT0078066 @ danRer10
Intron Retention
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22855230-22855656:-
Coord C1 exon
chr13:22855473-22855656
Coord A exon
chr13:22855386-22855472
Coord C2 exon
chr13:22855230-22855385
Length
87 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
GAGTGTTGGCTGTTTGTCAGGTT
3' ss Score
4.16
Exon sequences
Seq C1 exon
GTACCGGCACTAATGCATGCTACATGGAGGAGCTCAGACACATGGACATGGTGGAGGGAGATGAAGGCAGGATGTGTATTAATACTGAATGGGGGGCGTTTGGAGATGACGGCACATTGGAGGACATCCGGACTGAGTTTGACAGGGAGATTGACCGAGGATCCCTCAACCCTGGCAAGCAACT
Seq A exon
GTAAGCACACAGAACTTTAAAAGCTTGCAGAAAACTCATTTTAAGTAACTTTTCAGAAGGTAAAAGCGAGTGTTGGCTGTTTGTCAG
Seq C2 exon
GTTTGAGAAGATGGTGAGTGGGATGTACATGGGTGAGCTGGTGAGGCTGATCCTGGTCAAAATGGCTAAAGAAGGCCTGCTGTTTGAAGGCCGCATCACACCAGAGCTGCTTACAAAAGGAAAAATCGAAACCAAGCACGTTTCTGCAATTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452:ENSDART00000057638:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATGGTGGAGGGAGATGA
R:
AGCTCACCCATGTACATCCCA
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]