DreINT0079151 @ danRer10
Intron Retention
Gene
ENSDARG00000088140 | hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
Coordinates
chr6:34968273-34969804:-
Coord C1 exon
chr6:34969690-34969804
Coord A exon
chr6:34968468-34969689
Coord C2 exon
chr6:34968273-34968467
Length
1222 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CATTTTTTATATTTTGACAGGTG
3' ss Score
9.35
Exon sequences
Seq C1 exon
AAATGCGATTAAAATGTTGACCACGGGGGAGGGTATTCTGACCCAGGAAGATAAGGTCACACCCATTGGTTTGCAGGAGGTGTTTGCTACTAATCTTTTTGGTCATTTCCTTCTG
Seq A exon
GTAAGTGGATGGTTTTGGCACAATGAACGTGTTTCGATGACCAAGCATAAAGATAAACAAAAATATAATACCAAAACCAGTGTGACTTCCACTGCATCATAATTTGGCTGCGCTGGAACATCACATATTTATAGTACTTTCCATGCAGCACTATCAAACAATTCATCTGCCTCACAATGGTCTCTCCCAGGGAATTATTTCATTTCTAAATGCCACAGGATTCCTTCTGCTGTTGTTAGTAACCTGTTCTCTGGCAGCTGCCCTGATCAATAATTCATCTGAAGGACTCTAGTGCTAAAGATGTGTTGTGTCCTCAAATTGCAGCCCTCATGAAGTGTTTCTATTTGTTAATTGAAGAGCTCATTCATTTGCATTATGAGGCATCTGGCCTTCAGTATAGGTAGTTAAGGCAGTGCTGTTCTCTCTATGTGTTACCCTATGTAGTGGAGTTATTGTGGCTCAAGTGGCATAGGCATTAAAGTTTCAGTAGGTATGACACTCCATGTCCTCGAAGGCTAGGCGAGACGTATCGATTTACTGCTGCGACAGCACCGGGTGTCTGAGGGGGAGCAAGTGAGACTTGTGTTTCTAGTCAAATTGCCCTCTGCTTCTTCCTCACATGGACACTAAATGATTTTGTTTTGTTATTATAAATATTAATATTATTCAGAATACATGTAACTATAGATGAGTTAAGTTTGTAAACAAACGTTATTGTTGGGTTGACCAAGTCTAATGAATTAGCATGTCGCTAGCAAAAATTAACATCATACTATCATTGTGATAGCATTTTACCATTGCATTAGCATGTTTTACCATACATTTGGATATTACTAACAAGCTTTTATCATAAATTAGCTTGTTGCTCGCCTGTTTGTAACATGAATTAGCATGCTGATAATGCAAATAAGCATGTTACATAATTGCACGTTGGAATTTTGCTAGCTTATTTCTAACACAAATAAGAACTTATTTCTAGCATAAATTAGCATGTTGTTAGCTTGTTTTTATCATGATCAAAGTTTTTGCTAGCATGTGAATTAGCATGCTGTTGGCAAGAATTACTATGCTGCTGGGATATTTTCAACAGAAATTAGCATGTTTAAACAAAACATTAACAAATTATTGTCAACAGAGCATACAGTGTTTTTGTCATTTTGTTTAACACTTTTTATGATGTAAAAATAAAATAATAACTCATACATTTTTTATATTTTGACAG
Seq C2 exon
GTGAAAGAACTGGAGCCTTTATTGTGCCAGACAGAGCACAATTCTTTAGTCATCTGGACGTCCTCCAGTAATGCCCAGCGATCCTCCTTTAATCTCGAAGATGTGCAGCATAAGAACGGCCCTTTGCCCTACAGCTCGTCGAAATATGCTTCAGACCTGCTTAGCTTAGCCTTGAACCGCCACTACAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088140:ENSDART00000113097:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCGATTAAAATGTTGACCACG
R:
CTGGCTGTTGTAGTGGCGG
Band lengths:
310-1532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]