DreINT0081382 @ danRer10
Intron Retention
Gene
ENSDARG00000086724 | im:7151449
Description
im:7151449 [Source:ZFIN;Acc:ZDB-GENE-041111-283]
Coordinates
chr6:47485066-47486103:-
Coord C1 exon
chr6:47486033-47486103
Coord A exon
chr6:47485316-47486032
Coord C2 exon
chr6:47485066-47485315
Length
717 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TCTCTGGACTTTTATCACAGGCC
3' ss Score
6.29
Exon sequences
Seq C1 exon
TTCTTACAATACTGGCGAAGATCAGAGGACAAAAGACGGGTTATTGCTTTATCAGACTTTATAAAGCCAAG
Seq A exon
GTATCTACCCATGCTGAATCCTCAATATGAACTTTTGCTTGTATCATCAAATGCACTCATTAGTTCTGGTGTTAGTTGCAAAGTAGTCGGTAACAGTTTTAAAACAATGGACTATTAGTTAATGTATTTACTAACATTTACAAGCTATTAGTATTACATTTATTACAGTGTTTATTTATCTTTGCTCACCTTAGTTAATGTCATTTAAATGAAATAATATTAGTTAAATCGCTGTGCATTAACTAATGTAAACAAGCCAATGCAATCTCAAGGCAATTCGTAACTTTTTGATTTAGTGGCTAATTAATATGAATTTGACCAATCTAATTAGTACAATTTAGTATGATTTGCTCATCACCCAATAACGGTTGAGTTTATGGTGGGATTGGGTGCCACACCTCTTTTTTAAAATCGTACATTTTATCCACGTACGAATTAGCCACTAAACTGACAAAACGTAAAAAAAAAAAAATCCTTGTGAGATCATGCTGGAACAAGCACAACTTTAAATGGTAATAATGCATTAGTAAATATTGAACTATGATTAATGAATGCTTTACAAGATTATTGATATAAGTTAATGATAGTAATTACATTAACTAATGGACTATTATTCTAAAGTGTTACCAAACAGTCTCCATTAATTAATTATTCTCAATATGTTTTTGTGTCATCATTAATTTCCCTTAATGTGTTTTCTCTGGACTTTTATCACAG
Seq C2 exon
GCCAAACAATCGGACGGCTCCTTTGTTGTAGCTTTATTCCTCCAAGCGGACCCAAGTTTTACACATTGATTTATTTATTTATAATTGCTATGTATTTCTAGGCTTCAAATGACCAAACATAAAGATGATATTTTTGTATTGTAGCATTAAAGATTTTGTTTTTCTAATCTTTTGAAATGACCTGGGTGTGTTTTTCCCCCCCACACAATGTGACTAAATCCTGACCTCAGAACTGTTTTTTTTTTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086724:ENSDART00000128700:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0243010=AMA-1=PD(7.8=54.5),PF0200911=Rifin_STEVOR=PD(2.9=18.2),PF133471=MFS_2=PD(1.0=4.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACAATACTGGCGAAGATCAGA
R:
AAAAACAGTTCTGAGGTCAGGA
Band lengths:
310-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]