DreINT0083727 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21280398-21282132:+
Coord C1 exon
chr8:21280398-21280451
Coord A exon
chr8:21280452-21281971
Coord C2 exon
chr8:21281972-21282132
Length
1520 bp
Sequences
Splice sites
5' ss Seq
TTGGGTATG
5' ss Score
-12.69
3' ss Seq
TTCCTCGCTGTACAGTAAAGGAA
3' ss Score
-1.65
Exon sequences
Seq C1 exon
CTTCCATCAACCTACAGCACATTGGAGAGCAGGCAGAGGCCATGTTTGGAATTG
Seq A exon
GGTATGTTAATGCATTGCATACGTACAGCATCATATGTTTCATCTAACAAATAATCTGAGTTGTGCAAGCTGACATTCTTGACTATGTCACTCGCTTTGCAAAAATAAAAGCGAAGAAAAACACTCCGCCTCAGTTCTAGTTATGGGGATATTTCACCCCAAAAATGAAGATTCTCTCATAATTTATGCTCCCTCCACGATTTTCAAACCTGTATGATATTTTTTTTGTCTTTTGAAGACAAAAGAAAATATTATAAAGAATGTTAGAAACTGGTAGCCTTTGACTTTCACTTGTTCCTATTTTGGAAGACAATGTCTACAAGTTTTCTACTACTGTTCTTTGGAATGTCATCTTTTATGTTTAACAGAAAAAAGAAACAAACAGCTTTGAAACCCCATCCCCAACCCCCCGAAAAAAAGTAACGCATAAATGTTTGGAACCACTTAATAGTGAGTAAATTATTAGAGAATTTTCATTTTTTTATGCAAACTGGTTCTTTAAGTAATGTCACAGCAGAAGAGTGTTCCCGAATATCTGCATATGAGTCGATTGGAAACGTCCTATGTTTCATATAAACATTGTAGTAATCATTCTGTCTTTTCTCCCATTTTACCCAAAGATTCCCAACAAAGTCGAAGCAGAACATTTGCACATTTAAAACAATGCTTGGGTTTATATATGTAGTTTTCTCAATGAATCAGTTTTTAAAAAATTGAGTAAGACAAAAATTTAAAAGGCAGCTGTTACTTTCCAAAAATCCCTCATTCTGAATGCATTGTTTTAATAAATGAATCATCAAATCACTCAATAAAACAGGGATTTGACACCACCTCTTGGCGGTTTTACTTATTTATCAGTAATAGGTGAAAAAAACACACATGTACCGTTGAATCAGAACTATTAGCCCCCCTTTGAATTTCATTTTGTTTTTTAAATATTTCCCAAATGATGTTTAACAGAGCAAGGAAATTTTCACAGTATGTCTTATAATATATATTTTTTTATTTCAGCTAGAATAAAAGCAGTTTTTAATTTTTTAAAATCCATTTTAAGGACAAAATTATTAGGCTCTTTAAGCTATATTTTTTCGATAGTCTACAGAACAAACCATCGTTATACAATAACTTGCCTAATTACCCTAACCTCCCTATTTAACCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTATTGTCATCATCGCTAAGATAAAATAAATCATTTATTAGAAATGAGTTATTAAAACTATTATGATTAGAAATGTGCTGAAAAAAATCTTCTCTCCGTTAAACAGAAATTGTGGAAATAAGTAAACAGAGGGGCTAATAATTCAGGGGGGCTAATATTTCTGACTTCAACTGTATATTAATTATTGAAATAAAAAAAGTCCCAAAAAATGTGAAATATTACTATTGCGCATGATCACTCACAACATTGTATAACCTCTGCCCTTTCCTCGCTGTACAGTAAAG
Seq C2 exon
GAAACAGCATTCTGGAAGTGGATGATGAAGGAGGACGAATGTTTCTGCGTGTTTTGATCCACCTCATCATGCACGACTACCCTCCATTGGTTTCTGGGGCCTTGCAGTTGCTGTTCAAGCACTTCAGTCAAAGACAAGAAGTCCTTCATACTTTTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCATCAACCTACAGCACA
R:
AGTATGAAGGACTTCTTGTCTTTGAC
Band lengths:
206-1726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]