DreINT0083920 @ danRer10
Intron Retention
Gene
ENSDARG00000019614 | jade3
Description
jade family PHD finger 3 [Source:ZFIN;Acc:ZDB-GENE-030131-928]
Coordinates
chr6:37505173-37508044:-
Coord C1 exon
chr6:37507586-37508044
Coord A exon
chr6:37505291-37507585
Coord C2 exon
chr6:37505173-37505290
Length
2295 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TTTCTGTGTCATGTTGTCAGGTG
3' ss Score
8.49
Exon sequences
Seq C1 exon
TGTTCGGTTAAGAACTGCACCATACCTTTCCACGTCACCTGTGCCTTTGAGCACAGCCTGGAGATGAAGACCATCCTGGATGAAGGTGATGAAGTCAAGTTTAAATCCTACTGCCTAAAGCACAGCAAACCCAAAGCAGGAGAACCGGGCTTGAGTCCGGCCCGCCACAAACCTCCAACCGAGACTGACAAACTGAGTCTGAGGGCACAGAAGCTTCAGGAGCTGGAGGAGGAGTTTTACACGTATGTCCATCCTGAAGAAGTGGCCCATGACCTCAGCCTGCCGCTCCACCTGCTGGATTTCATCTTTCAATACTGGAAGATGAAGAGGAAAAGCAACTTCAACAAGGCCCTGCTGCCACCTAAAGAAGATGAGGAGAACCTTCTGCTGCAGCCACAGGAGGACAGCATTCATACACGCATGCGCATGTTTATGCACCTGCGCCAGGACCTGGAGAGG
Seq A exon
GTGAGGGTTTTGAAGCCTGAGTCACATTGTTTAGCAGTGTTTTTGCTGTTTTTGTGCGTTTGTTTGACTTTTAAAAGAAAACTTCACTTTTCTTTTTAAATAGTTTCATTTTACAAATCATCTAGAAAGTTTTTAGTACCATTTTTGAACCCATTCAGATGATATTCAGCTCTGTCAAGAGCACTTTTATCTTAGCTTACCATAGATCATTCCATCGAATTAGACCATTAGCATCTCGGTCAAAAATGGCAAAAAAAGTTTTGATAATTTTTAATTTAAAGATTGACACTTCTATAGTAACATTGTGTGCTAAGACTGACAGAAATTCAAGTTTGCTGTTTTCTAGGCTGATACGGCTCGGAATTATAGGAGTGTAATAGTCAGGGAACTTTACTGCCGTACCATGGTTGCAGCAGGTGCAATGATATTACCCAGTAACATTACGTAGTTACTATGGCAGGGCAATAAATCCATTTTCTCAATTAACTCGAGTGGGGCTGTGCAATTAATCGAAATCGAATCGTATTTGTGATTTGAAATGTTGCAATTAGCTAACACAAGGGGCAGCGATATGAAATGTGTATAATTTATTTCCCCCACCCAAAGAGAATGCGTGACTGCCGTCTGTGTGTGATGGTCTTACTACCCAATTGAGTGAGCACACTTTCATTCTGCCCAATCAGAGTTGCGCAACAGAACTATGCGGAAAGCCCACAATAAAAACAAACAAACAGGACCGCACGGACAAGTGGGATGACGCCGTCTGCCGCTTCAGAAGCATTAATAGACGAATTAATGTCAAAGAAAAACAGCACAAAGCTAATATGGGAATCATAAAACAGGTCATTTGTAAGAGATGTCGCAGAATTGTTGCCACAGCTTGAGGAAATACAACAACCAGCACCTAAAAAAGCACCACAGACGGCTACATGAAGAGTGTCTTGCTAAAAACTCAACTAAAAGTATTGCCAGTTACGCTCAATCTAGTAGCAAGCAACAGCAAAGTACAATTTCAGAGTTGTGTGCAGCTGTTACACCATATGAAAAAACATCATGAAGGCACCAGGAGATAACTAACACCATAACTCACTACTGTCTGCTGTAGAGAAAAATTAGTGTTTCATTTCTGAATATTATAAACAGTTTTGAATAAAAGTTGAAGTTGGTGAATATCGTTTCAGTTCCCTTTTCACTAACAGTCACTGCATTTTAGCAGTAAGTAGCTATGCTACAAAATATTGAGCTGAAGCTTGACTACAAAGTTGAATCGCAAATTGAAATCGCAGTATCTGTCAAAAAAAAAAATTGCCATTAGATATTTTCCCCAAATTGCACAGCCCTAAACTTGAGCGTGTATTTTACATCAAATTGTTTGAATGAAAAATTTTTAATTTTTTTTTTACACATGCGATGCTTTCCTCTGGTCTCCATTTCTCCGAAAACCTAAAGAAAATCTTTTTAAAAAGATCACCCACCCCTACTAGTTACCTAGTTGGGGACTATCTTCATTATGTCATTGCGCCTCCTTGCATAACTCCCTGGTATGGCAGCTCTAGTTCATTGATTATTACGCCAGAATAATCATGACCATTTATCTACACTACTGTGTATTTGGACTAAATTTTGTGAATTATATTACAACTTCTATTATTATATTACATTTAGAACATTTGGTGTATTTACAGGTTTTCCTTTAATGACACTGCTGTTTTCAGAAGGCATTACTTCAGTTTTCAGTGTCGCATTATTTATCAGAAATCATTCATGAAGCAGGAAGCTTCTAATGTGCTGATGAGGAAACATTTCTTAGTGCTTTTACAAAACTCAAGATTTGGATCACTAGATTTTTGAGCCATTGACTCGATTATTTTTCCAAACAAAAACTGGTTAATAAATATAATTCGCTTTCCAACCATGGATGCTAGTTTTATCAATAAAACGCTAAATTGCTAAATAAAATAAATTAATTGCTAAATAAATGTCTTTTTTCATTTTAATATACAGTTATTATTAATAATAATAGATTTTTATTTTTAATAATTATTTTTTTTATCATTCTTTTTGTTTAATAATACTCATTGCAACTTGTTAAGATACCAAATGAGCAGTCTACTTCAAAAATAAGTTGTCAGTAAATCAGTAAATCTAAGCAAATAATCATGTATATACAAAATAAATGTGTGTATTTGAAGCATTAATAGTATTGTATGGTTATAATTCTATATTTTAAACCATCAATGTTTTTTTTTTTTGAACATTATGATCTTTATGCATATTTCTGTGTCATGTTGTCAG
Seq C2 exon
GTGAGAAACTTGTGCTACATGGTGAGTCGAAGAGAGAAACTGAAGCTGTCCCAGAGTAAAGCTCAAGAACAGATTTTCAATCTACACGTTAAGCTTGTCAACCAAGAGTTGTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019614:ENSDART00000147826:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=26.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]