DreINT0084271 @ danRer10
Intron Retention
Gene
ENSDARG00000059067 | jupb
Description
junction plakoglobin b [Source:ZFIN;Acc:ZDB-GENE-110407-10]
Coordinates
chr19:5664041-5666411:+
Coord C1 exon
chr19:5664041-5664193
Coord A exon
chr19:5664194-5666291
Coord C2 exon
chr19:5666292-5666411
Length
2098 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
ATGCTTCTTTTTGTTGACAGGAC
3' ss Score
8.18
Exon sequences
Seq C1 exon
GCTACAGTGGGTTTGATCCGTAACCTGGCGCTGTGTCCAGCCAATCAGGCTCCTCTACGGGAGTCCGGCGCAATCCCTCGACTAGTCAACCTGCTGCTCAAAGCCCATCAGGAGACGCAGAGACATGGATCAGGAGCCCAGCAGACCTATCAG
Seq A exon
GTGCAGTACACTGACCTAGAAGTGACAACAAATATAGCACGCATATTCCAAAAAAATATAGATAAATAATTTTTTTTTTTAAATCAGTAAATATATATATGGTGGCTCACCTCACAGCAAGAAGATTGCTGGTTTGAGTCCCAGCTGGTCCAGGCATTTCTGTGTGGAGTTTGCATGTTCTCCTTGTGTTCGCGTGGGTTTTCTCAGAGTGCTCCGGTTCTCCCACAGTCCAAAGACATGCGCTATAGGTGAATTAGGTACGCTAATTTGGCCGTAGTGTATGTGTGAGAATGAGTATGGGTATTTTTCTCTGATTTTACTCATAATTCTCTCTTCATATCGCCGTATGCCTATTACATATCCATAAAACACTGTGATATAACCGCGCTCGGATCGGATCGCTTTCTCACTGTAATCGAACCGCTCCAGGGTTCGTTTCAATCGAGCCGAGACCACCTCACTCAAGCGATCTCGGAGCGATTACTTTGGCGCGGAACAGAGCGCGAATGCCCTGTTTACATATGCCAATCGAACCGCGCTAACAGGGCAAACGAGATACGTTCCGAAACAAAAGTGTAGGTGTGAAAGCACCCTAATACAGTGATCAACAATCAACAAAGGCAAGTTGCAGTAGAAAGTCTGTGCAAAACACCCAAAAATGCCTGATATAATATTAATAATATTATATATATGTAATTATTATAAAAAATGTATCAACTTGTAATATTTAAAGAAAATCTTTATTTGATGACTAAAACATCTAAAGCAAGGAACATGCTTCAGGTTTTTTGAAATATAAGCTGCGTCCCAAATGGCACACTATACACTATGCACTCATGCACTATGCACTTACACACTCAACAGGCTAGTATATGTATGTAGTGTCGTCCTAAATGGCACACTAATGGTTTTTTTACTAAGAGGAAATTTAAACCGTTTCCCTGATGACGTTTGACGGTCGCCAAATCAGTGAAATAAACGACCGCATTATCAAATAATACCTGCCGCGAGTGTAACCGCATTTACCATCGGGAGGCGCTTTAATCACACTCGTAGGAGAATTTTGCTTTAACCATCCAAAATAAATAAAGTTATCCAACATGTGTGCCTGATAGCTCCGCCTCTTCCGCTACGTGAGCAAACCTGCGGTCGTTGAGTGCGTAGCTGCGTTCCAAATCGCATACTTATGCACTATTCTACGCCATTTTGTAGTATAAATAGTGCATGTAGTGTTTTCACACTGAAAACTCTAATAATAACAAATGCACTTTAATTACCCGGATGATGCACTCATTCAGCCGCTAAAATGAAGTGTGGAATGATGGACACTTCACGCACTCTATCGGACGCACATGTTGGATAACTTTATTTATTTTGGATGGTTAAAGCAAAATTCTCCTATGAGAGTGATTATAGCGCCTCCCGATGGTGAATGCGGCAATACTCACGGCAGGTATTATTTGATAATTCGGTCGTTTATTTCACTGATTTAGCAAACGTCATCAGGGAAACGGTTTGAATTTCCGCTTAGTAAAAAAACATTAGTGTGCCATTTGGGACGACACTACATACATATACTATCCTGTTGAGTGTGTAAGTGCATAAGTACATAGTGCATGAGTGCATAGTGTATAGTGTGCCATTTGGGACGCAGCTCGTGAATTGTCCATCATTACACACTTCACTTTAACGGCTGAATGAGTGCATCATCCGGGTAATTAAAGTGCACTTATTATTTTTAGAGTTTTCAGTGTGAACACACTATTTACACTGTTTATACAACAAAATGGCGTGGAATAGTGCATAAGTATGCGATTTGGGACGCAGCAATAGACATAAATATGTTTTTTTTTTATAATTTAATGAAATATGCTAATTTTATTAGGAAACAAACGAGGAAAAATACATATTTTCTACAAAGACTTTTTTGTATATTTTTAAAAACATGTTGAAATATATTTTTAGAACGCAAATACATTTTCCAGAAAATCCATTTGCTTATAATAGTTGGAGAATATATTTTATTTGATGTATAAAACATCTAAAGAAAGGAACGTCCAACTTTTTTAAATATAGGAATGCTTCTTTTTGTTGACAG
Seq C2 exon
GACGGTGTGCGAATGGAGGAGATCGTGGAGGGCTGTACAGGAGCTCTGCACATTCTGGCCAGAGATCCAATGAACCGAGGGGAAATCGCCAGCATGCAGACCATTCCTCTGTTTGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059067:ENSDART00000148794:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=68.6)
A:
NA
C2:
PF0051418=Arm=PU(43.9=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]