DreINT0084805 @ danRer10
Intron Retention
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17438518-17441478:+
Coord C1 exon
chr3:17438518-17438767
Coord A exon
chr3:17438768-17441278
Coord C2 exon
chr3:17441279-17441478
Length
2511 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
AGTTTATGTGATCTATCCAGGTA
3' ss Score
6.57
Exon sequences
Seq C1 exon
CTTTTGCATGACTTCCCGGACGAGCTGCGGGCAGACATCGCCATGCACCTGAATAAAGACATTCTGCAGCTGCCACTCTTCTCCTCTGCCAGTAGAGGGTGTCTGCGTTCACTCTCTCTGCACATTAAAACCTCCTTCTGCGCTCCTGGAGAATACCTCATACGGCACGGGGACGCTCTGCATGCCCAACACTTTGTCTGCTCGGGGTCATTGGAGGTTCTGAAGGACGGCATGGTGCTGGCCATACTGG
Seq A exon
GTATGTTACAAAGAAAAAAACAACTCATTTTTTTAGAAACTAAAAGTGATTTTTATTATCTAAAACCTGTTATGACATTTATGATAGGGCTGGGACAATAAATCGATGGATTACAATTCGTCACCCCAGAATGCATTTGACCACTTATGGTACATGACTGAAAGCACAGGTGGTCTTCGTGTTGTCAAAAACCTGCCTAGAGCACCATCTGCTGTTAAAAACTAGCCTAAAATGAAATCTGCTCCTAAAAACTAGCCATGATCACCATCTGCTGTAAACAACTGGCTTAGTGCGCCATCTGCTGTAAAAACTAGCCTAGAGCACCATTCATTCATTAATTCATTTTCTTTTCGGCTCAGTCCCTTTATTAATTCGGGGTTGCCACAGTGAAATGAACCGCCAACTTATCCAGCAAATGTTTTACGCGGTGGATGCCCTTCCAGCTGCAAGCCATCTCTGGGAAACATCCATATACACTCATTCACACTCACACACTACGGACAATTTAGCTTACACTATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCAGAGCACCCAGAAGAAACCTGCGCGAACGCGGGGAGAACATGCAAACTCCACACAGAAGCACCAACTGACCCAGCCGAGACTCGAACCAGCGACCTTCTTCCTGTGAGGCAACAGCACTACCTACCGCACCACTGCTATGCCCCCTAGAGCACCATTTGCTGTTAAAAACTAGCATAGAGCACCATTTGTTGTTAAAAATTAACCTGGAGCGCCATCTTCTTTTAAGAACTAGTGTAGAGCGCTGCCTGCTATTAAACACTAGCATAAAGAGAAATCCGATATTAAGGCTAGCCTAGAGCGACATCTGCTGTTAAAAATCTAGCCTAGAGCATCATCTGCTGTTAAGCACTAGCCTAGAGTGAAATGTGCTGTTAAAAATAGATCTAATGCGCTATTTGCTGATAAAAGCTAGACTAAAGCGCCATCTAGTGTTAAAAACTAACCTAAAGCACAGTCTTTTGTTAAAAACTAACCTAGAGCACCATCTTCTGATAAAAACTAACCTAGAGAACAATATTTTGTTAAAAACTAGGCTAGAGCGCCATATTCTATTAAAAACTAGCCTATAGCGCCATCTGCTGTTAAAAACTAGCCTAGAGCACAATCTGTTGTAAAAAAAACTAACCTAGAGCACCATCTGCTGTTCAACACTAACCTACTGTGAAATCTGCTGTCAAAAACTAACCTAGAGTGCCTTTTGTTATTAAACACTAGCCTAGAGAGAAATCTAGTGTTAAAAACTAGCCATCTTTTAGTAAAAATTAGCCTAGGGTGAAATCCGATGTTAAAAAACCAACCTAGAGTTCCATCTTCTGTTAAAAGCCAGCCTTGAGCACCATCTGCTGTCAAAATCTAACCAAGAGTGCCATTGTTTGTTAAAAGCTAGCCTAGAGCACCATCTGGTGTTAAAAACTAGCCTAGAGTGCCGTCTTTTGTTAAAAACTAGCTTAGAGCGAATTCCGATGTTAAAAGCCAACCTAGAGTGCCATCTTCTCTTAAAAGCTAGCCGAGAGCGCCATCTGGTGTTAAAAAAAATAACCTAGAGTGCCATAACTTTTTTAAAGCTAGCCTAGAGCATCATCTGGTGTTAAAAACTAGCCTAGAGCTTTACCTAAATGTTTTTTTTTGACAAGAAGGGAGGGTGAATGTTTTGTCAATGGCAAAAAATAAATGAATTATAAATGATTTTATTATAGTAAATGCATGCTATTTAATGTCAAGTGTTCTGTCAGTTTGAAATTATTAGATTTTGGACAGATGGCACAGTAGAAAAAATACAGATCTTGTTACCAAGGCAATATTTTTGTCAAGTTTTAAAGGCTAAACTAAAAATACTTTTGGACACCCACACAAAAATCTAAATACAGATGTTTCCTCATCTAGTAACACAAACACAAACAACTTCCACTAGTCCAAGTATATCCAACAAGCTAGATATCACCACATTTTGACAAGATATCTGACTTTAAACCACACTGAACTGAGCTAAACTGAACTGAACTTAAACACTAAAAACTGAACTACCCTGATCCAGTTACTATGACCATTTATGTGAAGCTGCTTTAACACAATCAACATTATAAAAGCGCTATACAAATAAAGCTGAATTGAATTGAACAATTTAGTCTTAATACCACAATGAAAAAAAAAATCATTAGATTTACTAATTTACTGTTTTAGTTGCAAATAATTTATATGGGCTGAATTTAAACAAACCAATTAATTTTAGTAATGTTCATCTTAATTTGTTTGTTTAAATTTAGTCTAAATAAAATGTTTGCAACTACTTAACCCCAAAAAATATAGTAAATCCACTGAAGCGTTTTTTCAGTGCAGCTATTTTCAAATCAGTAGAGTGATGATACTTTAATAAAACAGATAAGCTCACTTCTGTGTGTGTTCTGCTTAAAAAAAAAACAGCTTGATACTGAAGAGTTTATGTGATCTATCCAG
Seq C2 exon
GTAAAGGAGACCTGGTTGGTGCGGATCTGCCTGGGAAGGATCAGGTGATCAAAGCTAATGCGGATGTGAAGGCCCTGACTTACTGTGACTTACAGTACATCAGTGTTCGAGCGCTGCAGGAGGTTCTGGAGCTTTACCCTGAATACGGCAGCCGCTTCAATGAGGACATTCACCACAACCTCACCTACAACCTCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565:ENSDART00000153763:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.6)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=70.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]