DreINT0084875 @ danRer10
Intron Retention
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:21033274-21034640:+
Coord C1 exon
chr19:21033274-21033488
Coord A exon
chr19:21033489-21034601
Coord C2 exon
chr19:21034602-21034640
Length
1113 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
CTGTATATCTCCTTTTCCAGGTC
3' ss Score
11.44
Exon sequences
Seq C1 exon
GTAAAGGTGACCTGATTGGTGCAAACATGTCGGTTGGTGACCGTGTCATAAAGACGAATGCTGATGTGAAGGCGCTAACCTACTGCGACCTACAGTGCATTAATCTGAGGGGTCTGTATGAGGTGCTGGATCTGTATCCTGAATACTCTCACCGGTTTGTGCAGGATATCACACATGACCTCACCTACAACCTGAGAGAGGGCCAAGAGAGCCAT
Seq A exon
GTAAGACATGAAATGAACACTGTAATTGATGCCATAATTTATTCTTTTGTTAATTAGGTATTTGGTTGTGTCTGAATAATCCTATCATGTTTTAAACCTAGACAGACGGATGGATGGATGGATGGATGAATGGATGGATGGATGGATGAATGAATTAGTGGATGGATGGATGGATGGATGGATGGAAAGACAATCAGATAAAGAGACTAGACAGACAGACAGACAGGCAGATGGATATATAGATAAATAGACAGATGGATGGACGGACGGATGGATGGATGGGTGGATAGATGGATGGATGAATGGACTAATGGACAGACAGGCAGATAGATATATAGATAAATAGACTGATGCATGGATTGATGGATGAATGGGCGTACAGACGGACTGACGGATGGATGAATAGAATATAGATAAATGAAAGGACAATCAGATAAACAGACAGATAGATGGTTGGATGGATGGTTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGAACGGATGAACGGACGGACGGACGAACAGACGGATGGAAGAATGGATGGATGGATAGACAATCAAATAGACAGATAGATAGAAGGATGGATGAATGAATGGATGGATAGATGGACTAATGAACAAACAGACAGATAGTTAGATATATAGATTAATAGATAGATGATGGATAGATGGATAAGTGGATGGATGGATGGATGGATTTTTAGATGGATAGACGGACGGAGAGACAGACAGACAGACAGACAGACAGACAGATAGACAGATAGACAGATAGATAGATAGATAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACTTATTTCATATTATATATGAAGAAAAGGTTTTGTTTCTTCTAAAAATAGAACTTAGCCCAAACTTTTGAAGGGTACACTAGATACACTTGTATTTTGCATCATACATACCTGTATATCTCCTTTTCCAG
Seq C2 exon
GTCATATCCAGGATGTCCAGTAAGTCCATGGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640:ENSDART00000090810:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGCAAACATGTCGGTTG
R:
TGTGTGTCCATGGACTTACTGG
Band lengths:
238-1351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]