DreINT0085318 @ danRer10
Intron Retention
Gene
ENSDARG00000078133 | kdm2ab
Description
lysine (K)-specific demethylase 2Ab [Source:ZFIN;Acc:ZDB-GENE-101007-5]
Coordinates
chr14:21459884-21462120:+
Coord C1 exon
chr14:21459884-21460022
Coord A exon
chr14:21460023-21462041
Coord C2 exon
chr14:21462042-21462120
Length
2019 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GTGAATTGTGTTTTCTGCAGACT
3' ss Score
9.07
Exon sequences
Seq C1 exon
CGGTCTGGCACACGACGGCGGTACCAGGATGATGGCATTTCAGATGATGAGATTGAAGGGAAGAGGTCTTTTGACCTCGAAGAGAAACTCCAGAGTGACCGATATAACTCTAATTTGGTCAAAATTATGGATGGGAAAG
Seq A exon
GTATGTGCAAATCCTGTTCTTTATTTTCAGCAGTGACTTTGGTTTTGTTAACTCAATATTATAAAACTAAAAATGGCTGGAAACTTCCAAAAAATTTGAAACTTATTTAGGTAGAAATTCTGCAAAATCCACTGTCCATCATGCATGCTTTACTGCAATGCAATAATCTAGGGCCTTGAGAAACTAGTAAAAATTGATGTGTTTAGTTTTTGTTATAACAATTTTCATCATAATCTTAAATCTTTTTTTCTTAATTTAGCTTGGTTTCTTTTATAACAACAGAAGCTGCAATGCTGTTTACAAACATACAAAAAATGTGAGTGTGTGTGAATTATTTCAGTAAACATGGTAAGCAAATTGAGAGCACATCTAATGGCATTTGTTATTCCTTTATACAGTAATACTATAATACAGCAGACAATTTACTGTGCTGATAATAAATGGTTGTTTGCTTTCAAACTTGGAACAGCAAAGCTTTTATTTGGACAGAAACCTGCAATGAAATGCTTCACTTTTATTGACCAGAAAGTTAAACCATTTATTCTCGCTACAAGTTAGGGATGCTCCCATCAGGGTTTTTGCTGCAGATACCATGTATTCCATTTTCATGGTGATTGGCTGATACCAAATACTGATTCTGATGCTTTAAGCTTTATAATGTATAAAGCACATTTTCCCTCTAAGTGTGATATAAGATTTCGCTTTCCCTAAGAGAATAAATAAAGCATGTCACATAATCCATTAAACATGTCTCTTATAACCATTTAGTGAGGAAATGTCATGGTCAGAGGGAGCTTTACAGAAAAAGATAGATAAAACAGACAAAACAATGGTGAGAAAAATGATAGGCAATTTGGAAACATTACAAATGATGGAAGAATTCAACATGTCTCACTGAAGAAAAGTTTATTTCCCTAATTTTGCTGACAGGTTTTAGTGAACTTGCAACATTGTCAAAAACACAAAACTTTTAGTTGTTATATGTAAAAATGCCTAAATACATGCAAGGCCTTTCAAATATTTTTGCTCATCTCCCATTTGCATTTGCTATATCTTTATTGCTCTATCAATTCAGTCTAATACCTGTAATTCTTAGATCACTGCATGCCTCTTGCGATCTGTTTTCGTGCTCATTCACTCTTGTTGCCATGATTTGTGGCCGTCACGGAGGCATTATGAATATGCGGGAAAGAGGTTCCTGGAGAGGTCATACGTTTAAATGGGACAATAGATAGGGGCGATCACTCCACTTGTGTCACAAGAGCTCAAAACACTGGATAAACAATTCTTGCAACAAAGAGACTATCACTTGTGCAAGTCACGCTAATAAACTGTATAAACAGAAGTTGCACTGCATCGGTATATATTTTAACTTCTGTGATGCGATCGCAGTGAACGCTCGCATCCCCCCATACATCATTTACCTCTTTACATGTTGCTGTGCTGCTGATGTATAATATAAAAGTGTGTACGTGCCTTTTCCTCTGGTTGTAAACTCCTAAACAAACACCTACGATCAGCGAGTATCGATCGAGTCACTAAATATTGTTTATCGGCCGATACTGATCTCCGGCCGGCCAATCGGAGCTTCCCTATTACAAAAATGTATTATATTAGGAATTATCTGTTATGTATGTTGCATTTTCACACAGTGCATCAATTTATACCAATACTATACAGTAAACCCTTTGTGATTTAATAATTGTAATAATACAATAATAAAACATTGACTTGCTATTCATTTAAAAATTATTCCTGGCAGCTGATGATCAAAACTATTTAATAAACTTGCAATTACTTTGATGTACTGTCATTTGAGTGTTAATTTTAAGATTCCAGATGCCCCTAATTCTAGATAGCCATATTGTGACATTTTCTTTGCCACTTCCACCTTTGGATTTTGATTAAGGCTGCATATTCTTTTTGAAATACTTGGCTCTGCTGTTGAAAAAAATGTTTTGACTGATGTATACAGCATGTTTAAAGTTCAAAGTTAATCGTGAATTGTGTTTTCTGCAG
Seq C2 exon
ACTTCACCTTGGAGTACATCCAACGGGAGGGTCTCCGAGACCCCATTATCTTCAAGAAAGCAGATGGTCTTGGCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078133:ENSDART00000111839:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]