DreINT0090712 @ danRer10
Intron Retention
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48831297-48834303:+
Coord C1 exon
chr9:48831297-48831311
Coord A exon
chr9:48831312-48834054
Coord C2 exon
chr9:48834055-48834303
Length
2743 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CCCTCTCTGCCTTGCTGTAGATC
3' ss Score
10.4
Exon sequences
Seq C1 exon
ATGAGCCTTTGCCAG
Seq A exon
GTAGGATAAATCCCTAATCACCCACAATCCTCTGCATGACACACTAATCTATCCCTGTGTCACCTGCTTTACTCACTAACCGTTCAGTTACCTTCAGAGTGTGGAGATATGGCAAAATTGTGTGTTTATAGTCTAATAGATGCTTAGAGATGTAGTTTGTAGTAGTTTCTTTTTTTGTTTTAGTGTGTAGAAATGGTACACAACCACTCAATACAAGATGCAGAAATAGTAAACAACAGATTTAAAGGTTTGGGCTGGGCAATATATCGAATATTAATAATATATCTGCAGCATTGTAAATATTATGGTAATTCAATGTACTTTTTAAATTAATTATTCCATTTGCTTAAAGACAGCATGTTTTTATGCATTGCTTTTGGGTGTGTATGCATATAAAATGCTTGTATATCATTATTTGGTCTGTTTATTTAGTAAAAACTAAGATTTTTTAGTGTTTTTACAATTTAATATATACTATTTTAAGTTGAATTGACAAAAATGGTCATTGATTGTTGTATTGGTCAATAATTACTTCATGAACTTGATTATTCAGCCGATTCGAATGTTATCATTCGATTGAATGGGCGTTATTAGTGGTTATCAGCTGATAGATATGGGCCCGTAGGGGCCTTCTAGGCTCAGAAGGCTGTTATCATCCATTTACATGGTTAATCAGCTTTAGATTACACACAGCTGCAACTGGAAGTTAATAAAAAATATTTATATTATTTATTACATTTTACCATTAATTGTATTTATTAATGTCTATACCCCTACCTCAATCCTAAACCCAATCGTCACATTAATGTAAAAACAGATCTGGATCTGGAGTCTTCTTTTTCAGTATAGCTGATTAACCATGTGGATGGATGATAACAGCCTTTTGAGCCTACCAGTAGGCACAGAAGGCTCCTACTGGCCCATATCTATCAGCTGATAACCACTGATAACGCCCATTTAATCAAGTGATAACATTAGAATCGGATGGATTATTGGTCTTGCACAATATATAATGTTGACATAACTGCCTGTGTGACTTTTTAAACATAATTGTTTATTTATATGTATAATTAAACATAAATCGCTGTTTAGTGGAAAAAATATTGACTATTCTTTTGAATTTAATTGACAAAAATTGCTGTTTAGTCACCAAGAATAAGTAAATCATCTATGTTAAAATAAAACACTTTTTTGTGTATTTTTCTCCCGTAATATTTACGTTCACTTCTCTTGCAAAGTTTTATTTATTGTAACTCACTGATTTGTAGTACATCTGTACAATTGAAAAAAACTATCCATTTTGCATTTCTTGTGTATTACTGTATGTGTATAATATTATTTTTAACTTTGGAAACTAGCTTAAATAAAAGACTTATACATTTTTCTAGCTTTTTTTTCTTTAAAATGCAGGCCCCGGCCCTGCTGTCCATGGTCAAACACATGCTCTCACATTATTAGTGCTGTGCAAGCATAATCTAAATACATTTTACATAGATATAAAGATTCATTTAAACAAAATAGATTGTCTGTTTTATGATATGCTTTAATAACTTTGAACATGCATTATTTTTCTTATTATTTACCATGTATATGTAGACATTCCATGAAACATTAGGTCATTAAAAATTACCTGAAAGTCCTGGAAAAGTCATTAAATTTTAGTAGTAAAAATGTGTATAAACCCTGTGTGTTGTTAATAACATAAACACACCAATACTATGACAAAAATAATCTAAAGGCTGATGGCTTTTCGTTTGCATGTGCTTGCTTTTTTAATATAACTATTAACTACTATTCAAATCTTCTGTGGGTTATGGATGAAATATAGTAATTCTAATAGTTAAAAAAGTAGAACTTTTTAATACAATTTAGAGGAAATACAGTGTATGCTCAGCATAGACGAGCACACCCATACACAGATCTCTCTTTTGAACACACTGTATAGGATGCTATACAATAAGATATTTGCGAATATACAGTATATATCAGCCAGTACCAAAGCCGAAATTGAAACTAATCTAGCAAAATAACTTTATTCCGGCTAAAATAAAACAAATAAGAAAAAGTATTATGGGAAATACTTTGAAAATTCCCTTGCTCTAATAAATACCACTTAAGAAATATTTAAATAAAGAATAAATTTATATTAGGCGAAGCAGTGGTGCAGTAGGTAGTGCTGCCACCTCACAGCAAGAAGGTCGTTGGGTCGCTGGTCCGAGCCTCGGCTCAGATGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCGTTCGTGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCATAGTCCAAAGACATACAGTACTGGTGAATTAGGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTATATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAAATGAATGAAATGTATAATAATTTTGCCCTCAAATGCATATATATGCAACAAGAAATTAATGTAAATATACATTTTACTGTATACTGAATATAAATAACCCATTTTTTAATCCATATTGCCCAGCCCTACAGTAAACATCTCTCTTAATGGTTGTGTTAGCATGTCCCCAGAATACTGTGCATCTTCAAGCATGTTTAGTCTTTGGATTCTTATTGATTCCCACCCTCTCTGCCTTGCTGTAG
Seq C2 exon
ATCAGGAGAGCTGCTCTGACAATAATGCGGGCTGCACTCACGGCTGCATCCAGGGCCCGTTCGGAGCCCAGTGCACGTGTCCCATGGGCTTCCAGCTGAGCAATGACTCGAAGACGTGTGAGGACATTGATGAATGTCACCCGCCGGGCGTCTGCAGCCAACACTGCTTCAACGAGAGAGGCTCCTTCCGCTGCCACTGTCAGGATGGATACACGCTGGAGGCAGACGCACGCACATGCAAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506:ENSDART00000167243:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=42.9),PF0764510=EGF_CA=WD(100=46.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]