DreINT0099024 @ danRer10
Intron Retention
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8272103-8272621:+
Coord C1 exon
chr25:8272103-8272220
Coord A exon
chr25:8272221-8272464
Coord C2 exon
chr25:8272465-8272621
Length
244 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
TGCATTAATTTGTTTTCTAGTCT
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTGAAACTCGTAACTGTGCTCCTGTGAAGAACGTCACTCGTCTGAAAGTCAATAATTGCACTTCAACTGAAGATGTTGAAATTACATCCTGCGCTGGTCACTGTGACTCCAAATCAAC
Seq A exon
GTAAGAGTGCTGCACCCCTGTAAATCACAAAAATACTCTGTTTTTTAGTTTGAAATATCAGAACTACAAAGTCTTAGTAACTGCAATGACAGGTTGTTGTTGTTTTTTAGGACAAATGGTTATCAAAATGGGCATTGTTTTGCATGCCAGGAAGGCTATTTTTATATCAAGATCAATCTTGCGTATTTTACTATCAGTCTAAATGCTGAATGAACAGAATTAAATGCATTAATTTGTTTTCTAG
Seq C2 exon
TCTGGATCTACATGGATACATGATGAACAGCTGTTCCTGCTGCCAAGCAGAGAGATCCAGCATTCGAGAGGTGACACTGATGTGTGAAGATGACTGGCAGAAATGGCTGAATATCCGGCATAACTACACATACATAGAGACATGCACATGCACTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994:ENSDART00000154598:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAACTCGTAACTGTGCTCCT
R:
GCATGTGCATGTCTCTATGTATGTG
Band lengths:
269-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]