DreINT0099034 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8289790-8290087:+
Coord C1 exon
chr25:8289790-8289897
Coord A exon
chr25:8289898-8290017
Coord C2 exon
chr25:8290018-8290087
Length
120 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
ATGTTTTACTTGTTAAACAGATT
3' ss Score
6.93
Exon sequences
Seq C1 exon
CACTCTGCAGACAGTGACTTTGCCGTTGTGGGAAATCTGGCAAAGTGTGAAGCATCCCGAACAGACACCTGCTTACACTCAGTTACCCTTGTCATCTCTGGGACCACT
Seq A exon
GTAAGCGCTGGGTTTAATTAGTTATGCATAATTCTTGCTAATAACAATACTGACTACCACTAATTATTAAAATAATCGTATTAATAATATATTTTTGCTGATGTTTTACTTGTTAAACAG
Seq C2 exon
ATTAGTTTTTCCTCCAGTGGAGATGTGACATTAAATAACATCAATTCAAAAGAGCTTCCTTTCAGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(22.9=100)
A:
NA
C2:
PF0009420=VWD=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGCAGACAGTGACTTTG
R:
CAATGCTGAAAGGAAGCTCTTTTGA
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]