DreINT0099898 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24949135-24951659:-
Coord C1 exon
chr11:24951467-24951659
Coord A exon
chr11:24949339-24951466
Coord C2 exon
chr11:24949135-24949338
Length
2128 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTCGGCTGTAAATTAAAAGGAC
3' ss Score
3.36
Exon sequences
Seq C1 exon
CCGTAACCATCAGCGTGCCCTAGAGTCCATGCAAGCCACGCTGGATGCAGAAGCAAAATCTCGTAGTGAAGCCATTAGGGTGAAAAAGAAGATGGAGAATGACCTGAATGAAATGGAGGTTCAGTTGAATCATGCAAATTGGTTGGCCACTGAGTCCCAGAAAATGGTCCGAAACCTACAGACACAGATTAAG
Seq A exon
GTAAATGTTAATCATATTAATTAATTCATCGTTAATGTCGGGAATAAAAACGAGTTTGGAGTATTTAGGGCCTGGGCACTGATGATGCGATGACTCTAAAATTGCCTAGTTCATTTATATTATTCCAGTAGCCGCTTTCTCTGCTTCTCCAAGGTAAATCGCATTTTTGAGGATCTAAACATGCTTGAAAACTCACAAAACTTTGCACACACACCTGAATCTGATACAGGTTTCAGAACTTTGTGTGGCAAAATGGCTCATCAGCCCTAGCTATACATTTTCAACGAAGTGCTCACTGAGCTACCTTTCATGTACATCCCCAAAAATTTACAGACACATGGAACGTCCCAATATATACAAAAGAGCGAAATCTGAAATCAGTTAATAACTTTGACATATTCCTTTTAATTTACAGACTGAATGCTTATTGATCGCTGTTCTCTGTTATTCTAAAGCTCCATTCACACTACAAGTGAAAAACAGCTACAAATTGACCATTCAATTTAATGGAGATTTAAAGCAATTTCCAGCGACCTCTGGTACGCGAGAGACAACAACTGTTGGTGACAGATGTGGGCGTGTTGAGCGATATGACAAGGTTGAGAATCATTCAACTTTATGCAAATAAAAAGAAACTTTTACGAGTGACCACCAATACGAGCATCAGTAGAGCTCACGTGATCCACTCTCAGCTCCTGCTGCAGCCGGTTGGATCTCCATGCTGTAGATCCACACAGACCTGCGTTTGCAGGAAATAAAAAGCCGCAATGATGGATAACACATTTTTTCTTGTTCATCTTTGTAATTAAGCATTTTGTGCACTGATTCCATTTATATTTACTGTTTTCCATGAACAAAGTTAATATTCAGCAGGTCATAAACTCATTTGCTCTCAGTGAATATCTAACCAGAGTCTTCAATTGCCACCCTGAGTAACAAGCAGCTACAAAGTCACAGCCATTGTGAATGCAGCATAAGCTTACTAGTTAGCAGTGACCATTTCAATGCTGCTTGCAGCTTTAATTCTATGTTATTATATTTTTAGAAATATTATATTTTCATTCAAACATTGCATTTATTTTAGTGGTCTCTATACCACACTACTAGAACCAAGTAAACAAAAACGTTTGGCTTTCACTTGGACAAAATATTGTTGGAGGTTTTCACTCACATTAAAGAAGCTAGGTCAGTAAAAACTGGTAAGTACTACAGCCAGTTAAAAAGTGTTTGTTAAATTAAAGAAATTACCTAAAGGTAAGCAATAACTGGGAAAAATCTGAAAATGGGTTCCTTTTCAAAATATCAGATTTTAGTTTTTATGCTGTGCACGAATAGGAAAGACCCTGTTTAGTAAATAAAAGGAAATACAGACCCTAATAATAAATTGTAAAGGCTCAGCAGGAACACGTCATAAGACATTAATATTAGGTTAGATTTAGGTTGTGACTTAAGGTGACCAAAATTCAATGTCTAGCCAGCATCTAAGGACAATGTTATTTTGATGTCCAATAAATACATCAAATGACGTTGATATTTGGTTAATTTTAAGTTGTGTTAGAAAGTGACCAAAACTCTTAAACCAATGTCATACTGATTTCAAATACTGACCTTTATTTGTCAGGTATAGTGACCAAAATCCAACATCTGATAGACGTCATAGTGGTAACGTCCACTCAACATCAACATCATTAGATATTGATATTTGGCCTGATGTTGGGTTCTGATGTAAACCTGATTTTCATTTCCAAACAAAATGCAACGTCCCCACAACTATGGGGTACAGCATCAATGTGACGTCACTTTGACGTCCTGTGCTTGCTGTGGACATTCAATAAAAACTACATAGGTTTTTTTTGGAAAATAACAAAACTTTTAATTTTGTTCATTTTTTAATTGTCCTTGAAAAAAAAAAATTATGTGAAAACTGGTAGGCCTTTATTTTATTTTAAAGTTGGTACTAAAGTGCCAGTGATTTTGAATACATTTTTGATAGCCCAACTGGAAAAGCTTATAGCTCCAGGATGTCAGGGTAGCAGTTTTGCGAGCCCTGAGAATATATTGTCATGAAATGTAAAAAAAAACAGTTTGTATAAAAGCTCTCATTTTGATCTCGGCTGTAAATTAAAAG
Seq C2 exon
GACCTTCAGATGGAGCTGGATGAGACAGTTCACCAGAATGAAGAACTGAAGGAGCAGTCTGCCGTGACTGAACGCAGGAACAACCTCTTGACTGCTGAGGTGGAAGAGCTGAGATGCCAGCTGGAGCAGAACGACCGAGCACGAAAACTGGCCGAGTTTGAGCTTCTGGAAACCACAGAGAGAGTCAACCTGCTGCATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=NA C2=0.662
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.5=100),PF0003816=Filament=PU(3.6=15.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]