DreINT0101068 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22242643-22243952:+
Coord C1 exon
chr21:22242643-22242749
Coord A exon
chr21:22242750-22243814
Coord C2 exon
chr21:22243815-22243952
Length
1065 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATG
5' ss Score
1.32
3' ss Seq
GGGGATTTGTGTGTTTTCAGGGA
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTTTCCTGGAGAAGAACCGAGACAGTCTCCACAGTGACATCATCCAACTCGTCCATTCATCCAAAAACAAGTTCATCAAGCAGATCTTCCAAGCTGATGTTGCCATG
Seq A exon
GTGATGCCCTTTTCCAATACCCAATCCATATTTGCTCAGCATTAATATGCTCACGACATGCCAGCGTGGCCACAGCTCTCCGAGGGCCAAATGTTGGCCATGCAGGTTTATGGCAGGGTTGCATTTGAAAAGAAAAGACGTGTGCTAGCATAATAGCCTTGAAAGAACACGCTGTGAATGAGAGAAGCGACTGCAACAAATGAGTCTCTAACATGACATTATGAGCACATCTGACTAACCCTGCTGCTGATACTCACTTTTTCTGTGGTAATGTCAGCCCTAATCTCTCTTGGCTGATTCTCAGCACACTTGGCTAACAGCAGTCAATTCTCTGTCTCTCTTTCTGTCCTCCTTCTGTCCTTCATTCCTTTACCTCATGTTTTGGCCTCAGTTTCTGTGTGGCTATATGGAGCCCACTGCAACCCTTCAAAAGGTAATCAATGGTGTGGTTTGTGTCCCTCTCAGACCCCTACCAAACTGCTTTTTCTCAATAGTCCTTGCTAAAACTCCTTCCTGTGGTTTTCTTCTCCTTTGGAAATGGTTTTGTGTTGAAGTAGTCGATGAGGGCACGCTGACATAGTAATTTAATAGCTCTAACAGTGCCATTATTCTCCAAAAAACTGTTCTGGTCTGTTTCTAGTTAGATGCGGCTTGTTCATTATTTAGAGGTTTTTTGTTTGTGGGAGAAATTCCAGTTACTTTTTTTCCTGGCACTGACTGTAGATTGAGGAAGGAAAAACTACTCGATTACTTTTTCTTCACAAAGCATTTGCATTCAGAGTGTAGGGAATAACAGCAAGAAAAGAGACAAACACGAGCAACGAATGAAGATCCAGAAGCAACACGATGAGAGGAAGTATGAAAGAATGATGTTTAACAAAGGCAGGAATGAAAGAAGAAAAGAGAGAAAGGTGATCTGGTGTCTTTGTGTTGTAGGTAGTTTGGGTGTATGTTGTACTTTTGTGTTGGTGTGCAGTTATAAAGTGTGTAGCACAGCAGCGGTCCTCTCCTGTGAGTTTCTCTTGTTCGTGTGTGAGCTGAATGAGGGGATTTGTGTGTTTTCAG
Seq C2 exon
GGAATGGAGACGAGGAAACGCTCGCCGACTCTCAGCAGTCAGTTTAAGCGCTCACTGGAACTGCTCATGAGGACGCTGAGCGTCTGTCAGCCTTTCTTTGTGCGCTGCATCAAACCCAACGAGCTCAAAAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCTGGAGAAGAACCGAGAC
R:
TTTTTGAGCTCGTTGGGTTTGA
Band lengths:
238-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]