DreINT0102522 @ danRer10
Intron Retention
Gene
ENSDARG00000005783 | ncanb
Description
neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
Coordinates
chr22:17974414-17977275:-
Coord C1 exon
chr22:17977148-17977275
Coord A exon
chr22:17974708-17977147
Coord C2 exon
chr22:17974414-17974707
Length
2440 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
ATTATGTGTACTTTGTCTAGGTG
3' ss Score
7.11
Exon sequences
Seq C1 exon
GTATCCCATCCAGTCCCCTCGGCCGGGCTGTTTCGGTGACAGGGAGGATTCGCCTGGCGTGAGGAACTACGGCACACGAGCCCCCGATGAGATGTTCGATGTGTACTGCTTTGCCAACAGTCTGCAAG
Seq A exon
GTACCACATATGCCTTTGGTTACAGCTCAGTCAGCCAAAAAAAATGTGTCTTTAAATGTCCTCGTGAGCCTCAGACGTCGTAGATGCATGTACCTACTCGCATCCCAAACTCCCAGAACATCTAAGTAGGTCACCAAGCTTTCAGCCCCTATGCCAGAATGAGTACAGTATAACATGTTCATGTGTTTTGTGCAGAAATGACAGTACCTTACTGTGTATTAATATTACAAGCTGCCTTAGTGGGGTTTGAAAAAATTGCTTTTGGTTTAAAGTACTCACCGTTAGGTCATCCGAGGTGACTATTGTTCTTGAAGAGAACTTGAAAGGTCCTATGAAGTGCTTTGAAATATGCATTTTTGTTCAATGTGTGATATGTGAGAGTGGATGATCCCATCATATGAAAAATGTAAAAAAGAAATTGTTGATCGTTTAGGCGGAGTTGACAAACTGCAAGTTTTGTATGTTACAGTATGTCTTCTAAAAGCAAATTGTGTCAGTGTTTGGAGCACACTAGCTTATACGTAGATATTCTTAGGTCTAGGGATGTCCAGATCCAATTACGTGAGCCCATTCACATGGTTTCACAACCGATCGGAATTGGACATTACCTCCCGATCAGGACTCAAGTATACATGTAAATATACATCTATAGTTATATATAGTTAGTGGCACAGAGTCAGACCTCTTTCTTGACTTCACACAGAAACAGCAAAACATGCGTCATGACATCACTTTGTTCCAGATAGGTTATTGGTTAAATGCAGGTAAAAAGTAGAAAACAAAAGCAGCTTGAAGCAAATAACGTGAGTATGTTCGCGCTTTGGAGGTATTGTAAAGTTGATGATGACAACATTGCCAACATTGTGAGATATGTACACTTTTCATTGCAGGAGGTGAAAAGGAAAATGCTACATTTAACACAACAAACCTGATAAGACACCTCAGAAACAAATGTAGAACCTTGATTTGAAATGCAGTCTCACCACTATTTCACAGAGAAAGCTCTGCCAGCCTATTATAAAAAGATTTCTTACGAACTACTTGTCCCGCTATTAGATGTACAGTACCCCATGTTTGTTTACCACAGACATTTGGAGTTTATCCGTAGCTTCCATGTGTCTACTAAGTCTTACCGCACAGTGGATTAACTCCATCATGGATCTGTTTCTTTGCTCTTCTTAATTCTTTCTTTATGGGTTATAGAAGTATCAGATTGGGTTTCGATATTGGTAGATACTCAAAATCAAAAGAATCAGGGCCCTATAATACACCCGGCGCAATGTGGCGCAAGGCATGACGCAATTGTTATTTGCTAGTTTCAGCTTGACGCAAGAGTCATTTTGACGCTCATATTTGTGCCCATAGGCGTTGTAGTCTAAAAAGAAAGGCTATTGAGGTGTATTGCTGTCGCGTTGCTCTTTTGAGAAACTATAATAGATTTTTCAATAAACCAGATGAACAAAGCCGGTCTATTGTCCAATGCAGAGTGCGTTAGTTGTGCGCCTCACACTCACTGCTTAATACACAGAAGATGTAGAGCAATACGCAAATATCTTTACAAATGAAAACGAATTAAAATATTAAGAATATATATAGGATATAATAAGAATATATATATATGATATAAATATAAAGAATTTAAATATTACAAAACATATTATTTTCTAGCCTATAAATATAAAAAACATACTTTCATACTTTCTTTTATTTAGATTTTACGGAGGCTTTAGGAAGGTTTTTAGCTGAAACCTTGGTCCTTGGTGATTCATCAAGTGCAACTCAATGTTTACTGACGCTTTAAGTGTCAAATAAACATCTCAGTAAATCAAATCGGTTTCTGCTCATTGTAATTGCATATCTAAGTACTGGTATTGGTTTGGTTTATGATAAATCATAAGGAATTTTGCATAATTCGCTGTTATTATTGCTGTAAGAACATGAAATATGTGACAAAAACACTGTAAAGTGTAACAATGTAAAATCACTGTAAAAATGCATTATATATTGGCTGTCACCTATGTATGTGGAAATAAATGCTTATTTTTATTAATGTCATTGTTATCTACCCAATAAGGAAATAAATAAGGATAGCTTTTGATCTACTGTAATGTAAATCGTTACTTAGTAATGCACGACATAATGTTATCAGATGATATAACACAGTGCTTAGTGTATTGTTATTAGCCACAAATTACAGAATATTTTCACCAGTTGATCTGTTGTAAATTGAAGTGTCATCAGGCAATACATAATATGTTGGCTGTTATATCGGCATCAGCCAATACTTGCTTAATTGTAATTTTATTGTTTTTGTATTCTAAATTAACCTAAATTTAAATGAAAGAAAAGTCCATGTGTAATACCATCAAATATTAATTCTTGTATAGTCACCTTCTTGTGGGAATTTTGCATTCTTACACATTATGTGTACTTTGTCTAG
Seq C2 exon
GTGAAGTGTTCCATACAAGTGTGCCAGAGAAGTTGAGCTTGGCATCTGCCTCCACTCACTGCCACACTCTGGGAGCTCAGCTGGCCACAGTCGGGCAGATCTACCTTGCCTGGCAGGCTGGCCTAGACCGCTGTGACCCCGGCTGGCTGGCCGATGGCAGTGTGCGCTACCCCATCAACCTGCCCCGGCGTAACTGCGGAGGGGATGAACCAGGAGTACGAACTGTTTACCACAACCCCAACCGCACCGGCTTCCCAGACACTACTGATCTCTTTGATGCTTACTGCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005783:ENSDART00000141563:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
NA
C2:
PF0019312=Xlink=WD(100=98.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]