DreINT0103027 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31890085-31890576:+
Coord C1 exon
chr5:31890085-31890184
Coord A exon
chr5:31890185-31890434
Coord C2 exon
chr5:31890435-31890576
Length
250 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
ATTTGCTTCTCTGATTCCAGTGA
3' ss Score
6.71
Exon sequences
Seq C1 exon
AACATCACATGCTACCGGCGTCTCTGCTGTTAATGTCAATATATATGTTAACGGCTGTGAGAGTATGAAGTTATAAAGTTCATTACATTTATAACCTTAG
Seq A exon
GTAAGCCACGCGATTTTATTCTAACGTTATGGGATATTTCTTTAATGTAACTTAACCTTAGATCTCAAAATATGCTCGGTAGGGCTTGAGAGATGTCATGTAATCTGCGGAAGACTGAAGTGTACCTGCATATCAAACTGAGCCTTTAAGATCTCACTGTTAAAAGTTCTGTCGTTGAAGAATGTTTAACACGAAGCCCGAGGCTCAACTCAAAAACAAAGACCACATTCATTTGCTTCTCTGATTCCAG
Seq C2 exon
TGAGAGAATGAGCGGACACACTGTACTGGTACTGTACGGCAGTCAGACGGGAACAGCGCAGGACACCGCGGAGAGGATCGGCCGACAGGCGCAGAGGAGGAGGCTGAGGGTCAAGGCGGAGGCCCTGGACACTTACAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0025820=Flavodoxin_1=PU(26.8=82.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCACATGCTACCGGCG
R:
ACATTGTAAGTGTCCAGGGCC
Band lengths:
241-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]