DreINT0103411 @ danRer10
Intron Retention
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:22998643-23001038:-
Coord C1 exon
chr9:23000931-23001038
Coord A exon
chr9:22998830-23000930
Coord C2 exon
chr9:22998643-22998829
Length
2101 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGA
5' ss Score
4.36
3' ss Seq
TGCATTGTTGCTTCTGTCAGGTC
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTTTTGTACTCTGACAGCTTCCGTAAGCAGGTGCAAGGAAAGGCCGCCTTTGTGCTGGACACCCCCGAGATGAGACGCGTCAAAGAAACCCAGCGTATCATTTCTGGA
Seq A exon
GTAAGAAGAAATTTCTGAGAATGTTTCAGTTAATTGACTTTTCAACTCTGTTACTTTAAAACAATGTTTGGGAGATGAATGTTGAGATCGCAAATATAGCAGTATTGTCAGGAGTCAGCAATCCAGTGTTTTATACAAAGTACAGAGCTTATAAAATATAAAAAAGCCCCTATTATGCATTATGAAAGGTTTTGGGGGTCTACAACAACAGGCTGATATACATGCAAGGTCAAAAACACTTTCATTGTCTGATAATATGCATTTATTTTTACCTAATTATCCCAACGACATCCATATGATTTGTTCAGCGATTAATTTGTTCCCAAACCCATTCTTAGCATGATGCTAATCTGTGCTGCTCATGCTGCTGTTATTTGGTTGGACTGCATTCAGCGTAAGACAGAGAAATGCCGACCACGGCATATCTACAGAGTGTATGTGTGAGCCCATTAAAGTGATGCAGTTAAACATGCCACATGGAGCGATAACTAGTAACAAAACACAATTAAATACATAATTTGTTATCCATAGAAAACTTGGAGGCAACTATTTTGATCGCACTTAAGTTAATTACACTTGTGAAATGGAGGAAGGAACTGATTCATGAACTGTGTACTGTAAAATTTCGGTCAAGCTCTGACAAAGTCCCGTAAATCAATAGCCTTTTCTGGTCCTTCCTTTAACAAACGGCCGACGAATCCCTCGTTGTAAGCATGTAGATTGCTGAAGCACTCATCAGAAAAATGATTGGAACACGGCTCAAGGCTGGGGCTATAATGCTGAGGTATTTTTGCAAAAATAAACCTCAACCACTGACTCTTCCCAGCCTCATCTTTAGGTAGGGAAAGTAACACTAACTTTCCCTCACACTTCAGAGCACATTGTCTTCGTGACATGATTCAACCGGGATCAGCTACAGTGTTTGTCTTCTTTCTTTTTCTTTCTACAGGGTTTGTGGGCAGGGCCGGGGGTTTTATTTTTCTCGGGTCTGCATGCACAACAAATGGGCAGAGCTTGAGTTCAGTATCAATGTTATGCCGTCACAGCTAAAGATTTTGTATAGTGGCGATTTATTCGAACCACTGAGTCGACTCTTTTATAGATGAATAATAGTTGGTATCAACAGTTAACATGATTCAGATTTAAGCTGGATATTTCACTTCAATTAGAGCTGTGTGTGTTACACACTGCATGGAAGGTCATTTTTTAAAAACCCATTATAGGGGCTCTTTAATTCGAAAAAAGTTTACAGATATGCCATATCTAAATGAAGTAAAAAACCTATTTGAGTTCAGTGACAGCTTCTTTAAGAATGTATGCTGTGCACGATTGGAAAAACTGGAAAGCAGTGCACAATTTGCTGTAAAACTGATCAAAATGCACTAAACAACAAAAGATCATTGGCATTCAAGGCATGTTAAAGTGGCATTTATGAGTTAAACATGGATGAACGTCATTGCAGACTAACTATTAATGGAAAACCCAAGACTTTATTAAAGGGCTAAGTTAAATTATTTTGCTTTACATTCCTTAATTTAGACATATTAATTAACAGGGAAATAAAAGAACATGCTCGACATGGTGGCTCTGTGGTTAGCACTGTCACCTCAAAGCAAGAAGGTCGCTGGTTCGAGTCTCAGCTGGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCCCGTGTTGGCTTGGCTTCCCCCACAGTCTAAAGACATGCGCTTTAGGTGAATTGAATAAACTAAATTGGCCGTAGTGGATGTGTGTGAATGAGTGTGAATGGGTGTTTTCCTGTAGTCGGTTGCAGCTGGAAGGGCATCCGCTTTGTAAAACATATGCTGGGTAAGTTGGCGGTTCTGAATAAAGGGACTAAACCGAAAGGAAAGAAATGAATGAATGAACATCCCTCTCTTCTATCTATTATTTTGCTGAGAGTAAGAAAAAACAATGAAACATGCAACATTAAAATCCTGCCCTCAATACAATTTCCTTTTGAGTTGGAAATATGTCTCAGTACTGAAGTCGGTAGCATCTTCCAAAAAAAATCTTTTGCAACAGTAGGTTTTTTTGTTTCATGCTTTGCATTGTTGCTTCTGTCAG
Seq C2 exon
GTCAAATACCACCAGGACTTTGAGAAGAGTAAGGGCAGCTTCACCCCCACCATCTCTGACCCAGTAACTGAGCGTGTGAAGAGGAACACCCAGGACTTCAGTGATATCAACTACCGTGGCATCCAGAGACGTGTGGTGGAGATGGAGAGGAAACGTGCCGAGGAGCACGATCAGGAGACCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630:ENSDART00000143888:130
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.683
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=17.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]