DreINT0105519 @ danRer10

Intron Retention

Gene

ENSDARG00000052139 | notch3

Description

notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]

Coordinates

chr3:53279240-53280175:-

Coord C1 exon

chr3:53279646-53280175

Coord A exon

chr3:53279564-53279645

Coord C2 exon

chr3:53279240-53279563

Length

82 bp

Sequences

Splice sites

5' ss Seq

CAAGTAAGT

5' ss Score

10.08

3' ss Seq

TACACTTTCTCTTCCCTCAGCCC

3' ss Score

8.93

Exon sequences

Seq C1 exon

GGGTACGCAGGTTCTAACTGTGAGAGGAGCATGAACTGCAAAGAGCTGCCTTGCTACAATGGAGGCAGTTGCACTCTCACCACACGAGGGGCACGTTGTACTTGCATTCAGGGCTTTGGTGGGCCATTGTGTCAGCACCGCAGCAATGACGGCTGCTCCTCCAAGCCATGCCACAATGGAGGCTTATGTACAGAGGAAACCAGCTATCCATTTTTTCACTGCCAGTGCACCAATGGCTGGAAAGGCAAACGATGTGAACAGAAAACTGGGTCATCGGCTCCACTTCCTTCTCCTTGCCCTATTGCTGACTGCTTCAGCAAGGCCAATGACGGTGTGTGTGACAAAGAATGCAACTCCTTAGACTGCCGCTGGGACGGAGGTGACTGTTCTCTTGCTGTAAACCCCTGGGCACGCTGTGCAGACCCTCGATGCTGGCGGCTCTTCAATAACAGCCAATGTGACGAGTTTTGCAATAACGCAGAGTGCCTGTTCGATAATTTCGACTGCATAAACAAAGAGAAAGTCTGCAA

Seq A exon

GTAAGTTCTGTATTCATTTTTTGTCTTGCTTTATATAACAGTTTATGATGTTCCATTCCCAATACACTTTCTCTTCCCTCAG

Seq C2 exon

CCCCATCTATGAAGCATACTGCACTGACCATTATGCAGATGGACTCTGTGATCAAGGATGCAATACTGAAGAATGTGGCTGGGATGGACTGGATTGTGCAAGGAAGATTCCAGAAGACCTTGCTGAAGATATGCTTGTTATTGTAGTCCTACTGCCCCCAGAGGAGCTTCTAAGGACACAAACAGCTTTCCTGCAGAAACTAAGTGCCATCCTACGCACCACGTTGCGCTTCCGTCTCGATCGAAATGGAGATTACATGATCCGACCTTACACAGGCCGTGAGACGCGCATTAAACGGGAGCTTAATCCTCAGGAGGTCATTGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000052139:ENSDART00000073930:24

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF0000822=EGF=PD(14.7=2.8),PF0000822=EGF=WD(100=17.5),PF0000822=EGF=WD(100=18.6),PF0006612=Notch=WD(100=20.3),PF0006612=Notch=WD(100=20.9),PF0006612=Notch=PU(15.0=3.4)

A:

NA

C2:

PF0006612=Notch=PD(82.5=30.3),PF068168=NOD=WD(100=52.3),PF076847=NODP=PU(4.8=2.8)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSDARP00000068420