DreINT0106188 @ danRer10
Intron Retention
Gene
ENSDARG00000101508 | nr6a1a
Description
nuclear receptor subfamily 6, group A, member 1a [Source:ZFIN;Acc:ZDB-GENE-991207-19]
Coordinates
chr8:52902002-52904716:-
Coord C1 exon
chr8:52904564-52904716
Coord A exon
chr8:52902272-52904563
Coord C2 exon
chr8:52902002-52902271
Length
2292 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTTTGCGCTGGTGTTTCAGGGA
3' ss Score
7.98
Exon sequences
Seq C1 exon
ATATCCGTGGCCTGACCAATGTGACGCAGCTGGAGCAGTTGAACAAGCGTTATTGGTACGTTTGTCAGGATTACACGGAGTACAAGTACCCTCACCAGCCCAAACGCTTCCCCGAGATCATGATGTGTCTGCCAGAGATACGCTGCATTGCAG
Seq A exon
GTGAGTCTAGAAATTTAGGAGTTCATTCATTCATTCATTCATTTTCTTGTCGGCTTAGTCTCTTTATTAATCCGGGGTCACCACAGCGGAATGAACCGCCAACTTATCCAGCAAGTTTTTACGCAGTGGATGCCCTTCCCCTCTGGGAAACATCCACACACACACTCATACACTACGGATAATTTAGTCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGTGATGGCAGGGAGAACATGCAAACTCCACACAAAAACGCCAACTGAGCCGAGGTTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCCTCGCCGAAAATTAGAAGTTTCTTTCTTATTTAACACTAAAGCTCCCATTGACTATTGATGGCACTCATTGATCTCCATAGTAGATGGCACCAATTGACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGACTGCACCAATTGACTTCCATAGTGGATGGAACCAATTTACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGATGGCACTAATTGACCTCCCTAGTGGACGGCACCATTTAACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGATGGCACCAATTGACCTCCATAGTGGACTGCACCAATTGACTTCCATAGTGGATGGAACCAATTTACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGATGGCACTAGTTGACCTCCCTAGTGGACGGCACCATTTAACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGATGGCACCAATTGACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGACTGCACCAATTGACTTCCATAGTGGATGGAACCAATTTACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGACGGCACCAATTGACCCCCATAGTGGACGGCACTAATTGACCTCCCTAGTTGACGGCACCATTTAACCTCCATAGTGGACGGCACCAATTGACCTCCATAGTGGATGGAACCAATTTACCTCCATAGTGGACGGCACCAATCGAACTCCATAGTGGATGGCACCAAGTGACCTCCATTGTAGATGGCACCAATTGACCTCCATAATGAATGGCACCAATTGACCTCCATAGTAGATGGCACTAACTAATCTCCATAGTAGATGTTACTTTTCAAAGGGGATGTACCCGTTTTAACTCATATTTAACCCAATGTTTTAATTCATTCTTTCTAATGTTATTTATCCGTGCTGTTTTCCTATAGGATTTCATTCCAAAATGGCTTGACACTAGCGCCATCTAGTTGCTGTTTCCCAAACAGCAACAGAGTGTCGTCTCCTGGTGATTCTATGCTCGGATAAAATCTCATTTATTTCAATAACGTATAAAGGTTTCAGTCAAAGTTTATATTGAGTGGCCTTAATTACCATATACTTACATTTAAATTAATCAAGCAGTACAAAATGCACTAATTATATACAGTACATACATTTTATTAATATTGTAAAAAGATGATCTGCTTTATAATTACACTGTTGACCCATCCCTAACCTTAACCCAACCTTTAACTTAGCCATACCCCCAGACATCCTACTTCAAGAGCACCAGAAGTGTTGAGCAATACTATATGAACACTATAAGTGCATTGTATTTTTTTTTCTGATGCAAGTACAAAGTAATTGAGGCCACTTAATATATATAGCAGGGTTCATGAACACCACATTCTATGAAAGTCAATGAGTGCCATCACCAGCATTCCTCAAAATATCTTCTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGTTTCAGTGATTTTGGTGACTGTCACTTTAAATTCAAATAAGATTGCGCTCTTTTCAAGAGAAGGCGGAGCTAGAAATGCTTGTGTGTCAGCATAGTGGCAGATTCAGAAACAAGACTAGTGTCCTATGCTAATGAGGGAGAGATGGTCGCTAGTGGGCGGGGCTTTCGCTCTATGATGACACGTACAAAGAGAGAATGTCAATCAAAGTGTTTCTGCAGACTGTTTCTATCACGTCTGATTATAAACAATACAACTAATAAATGTTTAACATTAGAAGCTGGTTATATTCACACACTGTTGCCACACGACCTCTTATAAAATTGCATAATAGCTCCCCTTTTAATACGTTAATTCAATGTAACCTGACGTGTTTTGCGCTGGTGTTTCAG
Seq C2 exon
GGAAGCTGGTGAACATCCCTCTGGAGCAGCTCCCTCTGCTCTTCAAGGCAGTATTGCACTCCTGTAAGTCCAGTCTGAGCAGCTACAGGACAAGCTCCTCCCCCTGCGTGACGAAGGGTACCGCTCCTGCCAACTAGCCACGCCCCTTTCCTAGAAACACCCTCCCCATCTATTGCACGGGGGCGGGGTGTTCCTTGGGGGCGGGGCTTCCGGTACCTCCTCCTCCTCTCATGAATGTGACAAGAAACTATTTTATGCATTTGGTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101508:ENSDART00000161943:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(25.4=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(8.6=37.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]