DreINT0107562 @ danRer10
Intron Retention
Gene
ENSDARG00000016212 | nup214
Description
nucleoporin 214 [Source:ZFIN;Acc:ZDB-GENE-110203-3]
Coordinates
chr5:71149817-71152988:+
Coord C1 exon
chr5:71149817-71150468
Coord A exon
chr5:71150469-71152953
Coord C2 exon
chr5:71152954-71152988
Length
2485 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ACTTTAACCAACACTTGTGCACC
3' ss Score
-11.76
Exon sequences
Seq C1 exon
CCTCCACTGCTGCCCCGCCCCCAGCCACATTATCCTTCTCAGCCCCGCCCCCAGTGACTTCCTCTGCCCCGCCCCCTTACACATTACCCTTCACAGCTCCTCCCTCTGCTACCTCATCATTCACAGCCCCGCCCCCTTCCACATCATCCTTCTCAGCCCCACCTCCAGCATCATTTTCAGCCCTGCCCACACCCACTTCTTCATTCTCAGCTCCACCTCCAACATCATTCACAGCCCCGCCCCCTTCCACCTCATCTTTCTCAGCTCCACCCCCAGCATCATTTTCAGCACTTCCCACAGCTACCTCATCATTCTCAACCCCTCCCCCAGCATCATTCTCAGCCCCGCCCCCAGCCAACTCCTCGGCTCCGCCCACCTCCTCCTCTGGTTTCTCCTTTTCTCTTCCTCCTCTGAGCTCTGCGGCTCCTCCAGCTTTTTCTCTGGGCTCCAGCAGCTCCGGTTTCTCCTTTAATCCGCCCAAACCCTCGTCGTCCTCTGCTGCAGGCTTTTCTTTCAGCTCCTCCACCCTAAAGGAGGCCACTGCCGCTCCAGTTCCTCCTCAGCGTCCGGCCAGCATGTCTCCAATCATCAGCGCACCTAAAGCACCAGTGGAGCCCGCGACTCCTGCTGTCAAGATGAACCTCACTGACAG
Seq A exon
GTAGGCTTTCTTGTTGCTATTAAGTGCGTAAAACAAATAAGTGCATTGCTTTATTGTGTGTGCAGTTGAGTATATATATTGATATAGATGTGTATACACTCACTGGCCACTTTATTAGGTACACCTGTCCAACTGCTCGTTAACGCAAATCTCTAATCAGCCAATCACATGGCAGCAGCTCACCACATTTAGGCATGTGGAAATGGTGAAGGTGATCTGCTGGAGTTCAAAGCGAGCATCAGAATGGGGAAGAAAGGGGATTTAAGAGACTTTGAAATTGGGGGGCAGGTAAATAGAGCTGTAAACTTTTCGATTTTAGGTGAAAAATCGAATCTGTTGGAAAGACGTCCAATAGATTAATAGGTACCAAAAAAGTTGAATTAATAATAATAAATATAATAAAGGTGAATCCACTGTGTACTCATGTGGAACTTTATTAGCACATTGCTCCAACATTACAATGCTATTATAACATTAGGAAGTAATAACTTTATTAGCACATTGCTCCAACAATATAACATATTATAACATCACAAACTGTCCGTAGCGCTAAATCAGTGTGAGCCCTGAGCTTGTTTCTTTGCAACGAGATGGTCCCATCTGGGGGTAATGCAGAAGGAAGACTGCCGGAAAGCGCGCGTGCACGTCTAGAATGTCAGAACAGCCAATCAGAACAGTCAGACGCATTCACGTCCGTGCGGTTTACGAGAATAAAAGCCTTTGAATATTTTCCCAGACACATTTAGCTGCTAGAAATTAGTCAGATCACGTTTATATGTTCATCTTAATGCCAACCGTGTAATTAATTATCGATAAGATGCTTATGATGAGCCGTTGTTTGTTTATCTTCAAGCTTTGCGTGTGCCCGTGAAACAGCCGTGAGCGCCAGCACACACGCATATTATGTACATCTCGACATGCCAAAGTGTTTCTCTCTATGTTTTCATCAAAGATCATCCACAGAGTTTGTGATTGTCGTCAAATGTTTACAAATACAAGCGCAGCCATTTAGAGCTCATATCTGGTTAATGGTGTCAGAATTACCGCTATTTTGGAGTGGATGTGTGAATGCTCTGTTCCGGAAAAACTCTGTAACGTCCTCGCCTGTACGAACAGCGCTTTTTGTTCTGAAAATTTAAAAACGTCCATTTACCGCTGACATTTAAGCGCTGTTAAGCACGTTCCTTTCTCAAACATTTTTTTTTGCTTGTTCAAACTACTTCTTGATTTAAAATGAGCTGAATCAACACAATTATTGAGATTTCATTGGGTCAACTTGATATTTTGTTATGTTCAATCCATACATAAATTTGTTTAAAGTGCTAAGTTAACTTTATAAATTTGTGTTGGGACAACATGAATGAATTGTGTGGAACCCTGCATTTTTTACAGTGTTAAACAGCGCTGATTAGCCAATGTTCTGAAAATTTTCCATATTTTTACCGGTATCACTGTGTGAAAGGGGCTATTGACACCTGAAGTGTGTGGCTTGTGTCCAGTCTCCTCCTTTGCCTCGTTTTGGTGGCTGTCACTGCAGAAAACCCCGCTTCACACAGATAGCATGTTGGACATGGCAACAGGGTTTTCAGCGCTGTGTTAGCGATCTCTGGGTATTCTGCCATGACTTTAATCCAGAACGCCGGCAGAGTTGTTATCTTGAACACTGTTTTAAGGCCGCCGTCATTTGCAGTCTTTTTTCTTGCACGGACATGCTGGATTCAGCTGGTTTGTTGACAAATGGGTCACGTATCCATTCCTTGGCTGTTTGTGGGTGCTTTGAGGTTGGGAAGTAGCGCTCAAACTCCTTTAACACTGAAGATTGGTGATCGTGCACCAGCTTGGTGAGGCTCGGTCTCACACTAAATCCAAGCTAATGTTTGAAACATGTCCAATACGCCTCTGTTCACGTGGCGTCCCCACAAATCCAGTTTGGCTTTAAATGCAGCTACTTTATCTGCCAACTTAAAGATAAATAATTCTTGTGCGGCCCGGTACTGATTAATCCAGGCCCGGGGTTGGGGACCACTGATATAAGAGCACTTTGCATTGCCACTGTGTATGAAATGTGCTATATAAATAAACTTGCCTTATGTAATCCAGATGACATATTCCCTGTATAATCCTGAATGGTGTTTGTTTGTGTGTTTGTATTTGTGTGTGTGTCTCTCTCTGCCTGCATGTGTGTGTGCAGGTTTTCAGCAGTGGAGGCTCCTGTGCAGCCGTTCTCTCTGACCTCCACACCCAAACCCACAGCAGAGTCCAGCGCCCCCACAACAGCAGCGCTCAAACCCTCCACTCATGCAGGTACACACTCACACCACCGCTGTCACAACACACACTGACATGAAAATGCATGCACATAATTGTCTATTAAAATCTAAGGGTGATGATGATGATGATGATGATGATGGTGGTGAGTGGGCTTGACAAACCACCTGTAGAAGACACTCTTTCATCTCTCTGACACTTTAACCAACACTTGTGC
Seq C2 exon
ACCAGTTTTGCACATTCGCATAAGACGCTTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016212:ENSDART00000115182:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.764 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]