DreINT0111810 @ danRer10
Intron Retention
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24708158-24711195:-
Coord C1 exon
chr14:24711030-24711195
Coord A exon
chr14:24708594-24711029
Coord C2 exon
chr14:24708158-24708593
Length
2436 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CAACTGTGCTTCTCCCACAGGAA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAGTTTTCTCGCTTCCATGTGGAGATCACACCAATGCTGGAGCGTCTGCTGAACAACAGAAAAGAATGGAACGCACTGAAGGAAATACATGAGGCCAAAGTAGCCAAGCTGGATGAGGCCAAAAAGGCTAAAGAAGAAGCACATGCTAACTCAGATCATAAACAAG
Seq A exon
GTAAAGGATCAATCAAGCAGTGTTTCATTGTCTGTTGAAGGAATAGTTCACCACTAAATAACATTTAATTAATTATTTACAAGTTGTATATTAAGAGATATTCTGTGGAACACAAAAGAAGATGCTTTGAACAATATTCACGCTGCTCTTTTACAGCATGATAAAAAAGACTTTTGGGAAATTACTATGGTGGCTAAGAGAACTTAATGTGCTTCAATTTAGGAAAACACATGCAATTGCAAAAAACGCCAGCAAACTAAGAAAAGATCTTCATCTGTTTGACAACACATATTTAAAAAACATGCAGAATTTTCCCACAAAACAAACAAATGAATAAAATGCGCTACGCTTTCTCACAACACAAACAGTTCGTGATGGGAAGTTTGGATCATTTTACTGACTTAGATCTTTGAGTCTTGTTAATTGAGATGAATGAATCTTTATTTCATTCATTTCACCACAATATTATTAAAATGTTACGAGTTGCTTCCAAGCTCATCTACAACTAGCCCAAACGTTGATCACACTACAGTCAAGTCGTAACTAAAATGCTGGAAGAAAGAGAAAATAATAATTTATTATTTACCTGGTCTTTAGTCTATGAATTTATCAGCTCACCTCTTCTGGCAGGTCTTTAAAATTAAGTAGTTCGTTCAGGTCACACTGATAGAGCCATAAACCTAACCAATGCACACAGTCTGAGTTGAAAAGAGCCATGATTAGTTCAAATTTAGTTCACAATTAGTGTCTTTTGGTTTTTGAGTCATTTGTTCATCATTTGACCACATGTAAAGGAAGAGAGATGACTCAAACCCGAGGACTCAAAAAAATGAACCGATCAAATATTTTTCTAGCTGTAAATGCATGATTGGCCACTGTCTTTTAAGTGATAAATGAACGACTCAAACCGAGGACTCGAGTGATGAACAAATCAGATCTTTTTCTGGCTCTGACTGCATGTGATTGGCTACTGTCTTTTTCGTGATGATCAAAGGATTCAAACCCTATCAAGGAATTGAGAAAGAAACTAGTCCTCTCCACCTGTACAAATGTGCGAATGCACAAATAAACAAATCACTCCCTGAGAGGACTCATTGTTCTTGACTCTTACAAAAGATTCATTCAAAATGAATGAATCATTCAAGAATGACTCATCACAGCTCGGAAACACCGCAGAAATCTTTCTAGAGAACCCTAAACCGTGACAGACTCGTCTATTTAGGTTATGGTTATTTAGGCAAATAAAATACAAATGACAAGGGAACCAGGATGTTTAAATAAACAAACTAAAAACTCACCTTTCAAAGATCACCCTCTACTTTACTGAGCAATAGGCTGCGTTCAAAACAGCCTACTACTCAGTAGGTACTGAATTTGAATCAAACGTACTACTCGGTGGTTAGAAAAGTGCCTTCTATTTAGTAAGAATGTGAGCAGTATGACTGGAATTCGGACGTACTACATCCACCATGATCACGTGACCTATCCTCATGAGTTGTGTAGCTTCACTCACAATTATGAATTCTCTCTCGTGTCTCATGGGAAAGCGCTGCGTGCATGGGATGCGCACTTTAGAATCTTGCCGGAAGTAGTAGGTCAACCGGGTTCTTCTCGCATACTGATTTTTGAATTTTATGAATTCGGGCATACTGCTGGGCTCGCATACTGATTTTAGCATATTTTATAGTATGGAATTATGCGGTTTTGGACGCAGCCATAGGCATAGCATTGCGGCATCCTTCACATTTTTGTGTTCTCTTGAAACATTTCCGTTGTGTTTTGATGTTTTTGAAAGTGTGAGAAAATGCAGCACAATTTCCTAATAGTTTGCATTGTCAGAAAATGTAGCGCGTTTTAATAATTTGTTTACGTTGTGTGAAAATGCAGAGTGTTTTTTACAGATGTGTTTGCATTCAAAACGTTTTGCTGTCAAACGGATGAAGATCTTTTCATAATTTGCTGGCGTTTTTTGTAATTGCACTCTCGGCCACCATAAATTACACAAACTTCAGTTTGTTTCTTGCACAAAACTATTGTATGATTTTACTTGTTTTGCGTAGTTATCCTTTTGTGTTTAATGCTGTTTCTCAACCACTTTCCTTGAGGATCACCAGCACTGCATGTTTTGGATGTCTCCTTTGTTTGGCACACCCATTACAGTTGTTTCAGTCTCTGCTAATGAGCTGATGATCTGAATCAGGTGTGTTTGGTTAGGGAGACACTGAAAATGTGCAGAGCTGGTGGTCCTCCAGGATCGTGGTTGAGAAACACTGATTTAATGTATGAAAAAGAGCTGCATGGACATTCTTCAAAATGTCTCCTTTTTTATTCCACAGAATATAGTTTTGTACACAATAAATAAATATTGTTTCTTTAATTTGTAAACCGTTCCGTTAGAAATATATATGCATGTTTACAACTGTGCTTCTCCCACAG
Seq C2 exon
GAAACTCTGTCCAACCCGCAGCTCAGTCCAAGACCTGTGTCATTTCCTAGACGTCAAGCAGCACAAAAACACATCGTAAGAATGTACGACAGTGTACCCATAATTTGGACCGCTTTTATTATTTCTCTCAGCAGGATGTCCTGTTAAATCGTTTTGTACTAGTCTTGAGCTTGTAAGTAAAGACATCCCTTTAGTGTTAGAAACAAACTATTACAATGTCTCTTTGACTTTTACAACAATAGCCATGACTGTCAATAGAAAGGTATTTTTAAAGCATTTAAGTACTTTATGGCTGAAACTGTACAGACTAGAGCATTCTTACGAAATAAAACATACATGGGAGTATATTGTGAATACATTTGCTAATTCTATATTGTATTTTTCCATTAATATTTATATGTAGAAATCTAAAAATAAACTGAAAAACTGCTAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380:ENSDART00000000392:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.438
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PD(7.6=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]