DreINT0112352 @ danRer10
Intron Retention
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30537389-30538738:+
Coord C1 exon
chr16:30537389-30537525
Coord A exon
chr16:30537526-30538525
Coord C2 exon
chr16:30538526-30538738
Length
1000 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TGTGTGTGTGCACTGTGTAGGTG
3' ss Score
7.43
Exon sequences
Seq C1 exon
GGTCCAGTTTGTACTGAACGGTGTCCACCAGGCCGTTTTGGTATAAACTGCTCTAAAGATTGTTTGTGCCATAACGGAGGTCACTGTGATCAAGAAAAGGGCCAGTGTCAGTGTGATGCAGGCTACACCGGAGAAAG
Seq A exon
GTTTGTAGATCTTTTACTTGAAAATATGGCTGAAGATAAATACCATAAAGTATAAGATAATATAAGATATATAGATTTATAAAAGAATATAGTTTAAAGTTTAGTGTTGAAAGATTTGAGGCCTAATAGTATCAAACAATCAATAAGAAACAGAACTTAAATGTCCTACAGGAGATCTTGGAAGTTGCTATTGTTAGCCTGATAGCACTGAAACCTACATCTTGCCATCCCATCTGTCATCCAAAGCCATCATGCCTCCTGAACGCATGAATGCACATTATAGACAACAACATTATATCATGTAGCATTCACCAGAGAGAAAACCTTATAGCACAGTTAGCAGTTACAGTACAATAACAAACCTAAAAATGAATATAGGTAGTTGATGCTTGCATACCATTCTCTGTCTGAACTGTGTCTGCGATGCACTGATGATATAACCTGTTCTGCATGAGCAAGGTGCACAGAGATATGCAATTACATATTTTGACAGAGTGGTAGGACAGCCAATCGTAATGTTCGGACAGAACATTTTGATTGGACAAACCTTTCTTGGTCCTACATCTTCCGCAGAATATTAAAATACTCATAAACACATCTGGAGCACTTAATTTAATGATTGCTGTCAGACGATTGCTACTTTCAACCAGGTTGGCAAAAATAATTTCTGAAGACAAGCACCTAATGCACTTTCAAACAGAGTATTCAGATAAGTTTCTTATTTGTTACTTAAATATATAGTTGAAACCAACATGCAATGTTCTAAATCATCTCAAACTTGATTCCTGGAGGGCCTAAGTTGGAGCTGGTTAGAGCTAAACTGTGCAGAGCTGTGGCCCTCCAGGAATTGAGTTTGAGACCATTGTTCTAAATGAAAGCATATTGATTGTAGATGACCCTTGGTTGTGACCCTTGGTTTTTAGCTCTAGAAATTCAGGATAAAGTCTTAAATGTACAGTAAACCACAAAAATTGTGTGTTTGTGTGTGTGCACTGTGTAG
Seq C2 exon
GTGTAACGAGGAGTGTCCAGTGGGCACATATGGTGAGGACTGTAAGGGAGTATGTGACTGTGCGAACGGAGCCCGTTGTTATAACATCCACGGCGGCTGTCTGTGTGAGCCGGGGTTCAAAGGTCCTCGCTGTGACCACCGCATGTGTCCTGAAGCGGTCTTTGGCATGCACTGTCAACACCGCTGCCTCTGCAACCCACTAAACACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753:ENSDART00000137977:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.5),PF126612=hEGF=PU(84.6=23.9)
A:
NA
C2:
PF126612=hEGF=PD(7.7=1.4),PF0005319=Laminin_EGF=WD(100=61.1),PF0005319=Laminin_EGF=PU(18.8=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTACTGAACGGTGTCCAC
R:
AGGGTGTTTAGTGGGTTGCAG
Band lengths:
342-1342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]