DreINT0113254 @ danRer10
Intron Retention
Gene
ENSDARG00000075509 | phf12b
Description
PHD finger protein 12b [Source:ZFIN;Acc:ZDB-GENE-110628-2]
Coordinates
chr15:24623605-24625796:+
Coord C1 exon
chr15:24623605-24623703
Coord A exon
chr15:24623704-24625713
Coord C2 exon
chr15:24625714-24625796
Length
2010 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GTTTGTTATGTGTTATCCAGGTG
3' ss Score
8.09
Exon sequences
Seq C1 exon
CACAAAAAAGGGACGTACAAGCTCGAGCAGTACTATGTCCTTTAACAGGAAAGGGGGCAGCTATCAACATGTGCTATAGAACTCTGTACATAGGAACAG
Seq A exon
GTATGGTTTACTACAAGCAATGTAATGCATTGAATGAATTCAGCCAAAACACTGACTGATATGTTGCACATTGGATTATTAAAATGAAAGCCTTAGGTTGCATTTTATTGGCCACAATGTTTCCTAGTGAGATTACAACAATGATCATTTTCCGCTTTTATTTTTAGTTTATCTAAGTTTAATTTTAACATATTATGAATGTGAGACTCTTATTTTTAAAATCGAAAACACAGCAAATACTCTTTGAATAAAGCCAAAGCCATCAGCATCAGATTGGTTTTTCATTTTTTCCACCTCAATCGCTGGTCAGAGTGCAAAATGTGAGATATACACATTATACATTTATTTTTCACCACCCTGAAGAGGCATAAGGTATCTTTTGTTGTGTATATTGTGAAATTTACCTTGTATGTTTCTAATGAGGCAACAAACTTTTAAGCATTGTGCCATTTGAATCAGGTGTAACAGAACCGCAATAAGGACCCACTAATTCTATGGATGTATTCTGGGGAAATAAATGAACATATACAACCATTTCTAGTTTTTTTTTTTTTTTATTACCTAAGCCATACACCTTTTTTGTGGATATCTGAGAACAATTTAACTTATTGAATTAATGCAGTATATGGCACCTTTTAACTTTAGATACATCAAGAGTGAAAGACCAAAAAAAGCTTTTAAGACACGGTCAAAGTTGCCACAGAGCATAGAAAAGTTGTATTCTTTGTAGTCTTTTTCCATTAACAGTATTGCTTGTTTGACGTAGTTATTTATTGCAATAGCAAACATGCATTACAAAGTAAAATGTATAAAATGATGCAGTTTCATTAGCAATGTTTCCATCTAAAGATGCAAATTAAATTTAAGCGCATAAAGGATGTGCGAATAAAGCAGCGTTTCCATCCAACAAGTGAAAGAGAATAAAATGATCACTTCCTGATTAACTGGCACCAAATATCAACAGTAAAAATTTAATTTACTACGGTAGAAAAAGCTGCGTCAATCTTTTACTTATTTAATAAATGACTTGCATCTCAGAAGACAAATGCCGACACACAATGATCATCTGGTGGCATTTAAAGGCATGAGATGCGGAGCACAAACACTCTTTGACAGTTTTAGAGGAAATCAATAATATACTAATACTAAAATGGTTAAGGCGTTTTGGAATGACCACAACAACATTTCAGATGCTTTACAATGTGCTCACCTTCCTGGTTTGTCCATTCACACACATTTTTATATCACAAGATCTATTATAACAAAATCACATTCACTTTTTTAATGCGCATACTGGAACTTGTTCGGGAAAAGTGTTTCCATCGTTGTTTATGCACATCTTTTCTTTTCAAAAAAGTTTATTCTACTTCATTGTGTGCATAAATTTTTTTATGCACATTTTTTTTCTTTTTTTTATGATTCAATTTTTATTTTCTTTTTCTTCAATAATTTCACAATACAGTCAGTTTATACATTTTACCTCCTTATTTTATGCACATTTTTAAAAAATGTTGCGCATCTTGGCATTTCCATCAACCATTTTTTTTACATGCGCATATCCAAAATGCCTATAAAAATAGGTGGATGGAAACATGGTTATTGTAAGACACTTGGCAACCAACAACCCATCTTGTTCTGTATAGTCATGCTTTGGACAATAAAGAAACACTGTTACTTGCAAACATTAATTTCATTGTTATGTAAAAAAATCAAATACTGATTGAGAATGGGTCCATTTAAGTGAATTCTGAAATGTACATTCAGGAAAAAATCTACTTGATGGGAGCTGGAAGTTTTTATGAAAGGCTAAAGCTTTGTGTAATGCATTGCATGCCATGCTTGTCCCAGACCACAAATAAAAATAAAACACTGGTGTTCATTGAAGTGGTGCAGATTATGTAAAAGTTGAATAAACAACCCAGGATTCCCTTTACCTGGATGTTAGAATAGAATGACCATGGCTTAACCACTTCAACTGTGCCAAATTAATGTTTGTTATGTGTTATCCAG
Seq C2 exon
GTGCTGAAATGGATGTGTGCCTTACAAACTACGGTCATTGCAATTATGTTTCTGGGAAACATGCCTGCATCTTTTATGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075509:ENSDART00000155900:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0049821=FHA=PU(7.9=14.7)
A:
NA
C2:
PF0049821=FHA=FE(42.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]