DreINT0113256 @ danRer10
Intron Retention
Gene
ENSDARG00000075509 | phf12b
Description
PHD finger protein 12b [Source:ZFIN;Acc:ZDB-GENE-110628-2]
Coordinates
chr15:24625909-24627777:+
Coord C1 exon
chr15:24625909-24626047
Coord A exon
chr15:24626048-24626130
Coord C2 exon
chr15:24626131-24627777
Length
83 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTTATTTGCTAAATCTGCAGGAG
3' ss Score
6.26
Exon sequences
Seq C1 exon
AACACGAAGCATTATGAGCTTCTGAACTACAGTGAACATGGGACAACTGTAGACAATGTGCTTTACTCGTGTGACTTCTCCGACAAACCAAACATCACATCACCTAGTGCACTCGCATCGAAAGTACAAAACAGCATCA
Seq A exon
GTGAGTACCACCCACATCCTGTTTTCAAAACATAAGCAAAACAATTCTCATAATGCATCATGCCTTATTTGCTAAATCTGCAG
Seq C2 exon
GAGGCAACAAGTCAAGGAGGCCGATTGGAGAGGTGTCTACGGAGCCTGTGCCGGTACCCACAGATAGCATGATGAGCAGCCTGGCTCAAGGAGGACCCAAAAACCCTTGCAACTGTAAAGCCAGCAGCTCCAGCTTGATAGGGGGCAGCGGAGCCGGCTGGGAGGGCACAGCTTTGCTTCACCACAGCAGCTGCATCAAAGTGGGATGCTTGCAGTTCCTATTCAGCATAGCGGAGTTTGCTAGCAGCCAACCCAAAAAAGAGGATGCGTCCAGCACCGTTAGCCAAGAAGAGACTCAAGTGGTTGACGTACAAACTCACAAACTCCACCAAATGCCAGTGCTACAGTCTAAGTCTGTATCATAACCCATTCTCTTTTTTATATATATATATATATATATATATATATATAAACTACAATGGACCGTAAGTTTGGAATAGAACATCTTTGATAAAGCGATTAATTCATCCGTTCGTACTGAGGTATTTTGGAGGATGTGTGTTATGGACAGAGTGTTTGCACATTACATTTCTATCATTTTTTTTATGCAAAACCCTTTTGACTGAGGAGCAGACGTTCGTCCTATAAACCTCACTTGTCGACACCACACCCTGTATATTTTGTGTCAGTACAAGAGGTTTTTATGTACTCTTTTGAACAATATATTTACTCCAAAATATTTTATTTTGTTATAAAAATGTATTGTTCTTTTTTTCTGCAGATTTTTGCACACTAGGTAACTATATGCAGAAGTGCATACATGTGCAAATACCTTTGTAGAATTTATTAGCTAAATCATTGAGCGTTCTGGTTTTCCTCTGGAACTGTCCATTTCTCTGTAGTGTTAGAGCCTCTACAGCCTTAGTTGTGAAGTTCATTTGTGTATAAAGCTAGTTGTTTAACTAAATTGTCTCTTTTTGGTCATGTACATGTGACTGAAGTGTCATTTTGTCAGCAAGAAAACATCTGACATGTATGTCATTACATTGTAAATATATAAAGATTTTTAAATAACAGACTATTCTATGAGTGTTTATAGCTGAGCCCAAAAATAAGCCATTTACACACCCTTGCATTGTTTCATGGCTGTATAATTTTCCTGTGAGCTAAGAAACATATTTTAAAGAATTGTAGAGGTTTATTTAAGTACACCTTTATTTGTATCGGCAAGAAAGTAGTCATCTCAAGATGTGTTCACTGGATATGAAGATTTGGACTTTTGATTGGTTCAGGATTGGTACACGGGAAGATTGTGGCTATTGTCCCCACATCATTATACCACCAGCAGTATGAACTGTTGATGAAACAGAATAGATCAATGCTTTCAAGGTGTTTACACAATTATGACCCTATAATCCAAAGGCAACAGAAGTGAAGACATCAAACCAGGAGTCTTTTTACCTGACTTCAATTGTTCATTTATTGAGAGTTTATCATGCCCTTGCTGTTTTTAGTTGTCAGGAGTGTCTTCAGTGTGCTCTGCTGTAGCTCATCTGTTTCAAGGTTGGATGTGTTGTTTGATCTTATCTAGACCCATAAAGGATTGTTCATTCAAGATTAAAAATGTGCTCACCTTTAAGTAGTTTTAACCTATACCAAGCTGTTAAACCTTTATAAATGTATTGTTTTACACTAAAGACATTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075509:ENSDART00000155900:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.430
Domain overlap (PFAM):
C1:
PF0049821=FHA=PD(46.0=61.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCACCTAGTGCACTCGC
R:
TGGCTTTACAGTTGCAAGGGT
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]