DreINT0113727 @ danRer10
Intron Retention
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4357395-4360515:+
Coord C1 exon
chr21:4357395-4357521
Coord A exon
chr21:4357522-4360264
Coord C2 exon
chr21:4360265-4360515
Length
2743 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGAATCTGTTTTTCTCTCAGGCT
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTGGAGCAGTTCTGATTCACGGTGAAGTGGTCCACCGCAGTGCCGCAAACACCTCTGACGCCTCACGCCACGTTTACACCTTCCACATTATGGAGTCTGAAAACACCGTCTGGAGCCCTGAGAACTG
Seq A exon
GTAAGAACTGTGCATGCTGGGTAATAAAGGCCACATGACTCAGATGATATACGCTATTTCCATCCATTCCATGTAATTTTATGTGTATATAAAGTGAAAAAGTAAAAGCTCACCTATTTGCATTAATCCAGCATTTTATGTGAACTGTCATTCAATAAAAGAATTCTTGCAGAAAAACTACATTACCCATGATGCTGCGCAGAAAATCCACCAATCAGAGTTTAAGCCTGGAATGAGATTTTTAGCTTCGCCTACACTCATGAAATGCCTCAAATTACATAAACAGAGTTTCTCTAAGCTCAGAAAATACTTTATATATGTACACTGAGAAAATTCTTGCTGCCTTACAATTTTTTGTTGATTCAAATGAACGTTTCTAGTCATTTAAACTTAAATTAGTCAAACTAACTACAAATATGACGTTAAATGTTCTATAACTTTTAAAAAAAATGTATTTCAACGTTGATTAAGTTATAAATATAGGTTAAAATATCATAAAAACATTTGTTTTCATCACTTTCTTATATATATATATATATATATATATATATATATATATATTAGGGATGTAACGGTATCAGAATTTCACGGTACGATAATACCTCGGTATGAATGTCACGGTACGGTATTTATTGAATCATTTACAGGAAAAACAAAACTTGTGAAAATACTCCAAAAAAGTGCCAAAAGTGTCAATGACATACAAATTAGCCATCTATCTGTAAGCTTTGAAACAGGAACTTCAATTTTAACAACAAAAAAATATTAAACCATGTAAAAAAATTAAGTTTCAATTTAGTATTGTAGAAAACTCGTCACATTCAACATTTAATCACTCACTCACTTAGATAGAGATAAGTTTTAAGGAAAATTATCATATAAATATAATCTGGTAAAAGCTGGTATCTCTGGGCATTTACAACGTCCCCTGCAACAGAAAAAAACCCTCTCATTTGGGACTGAGGTTTCTGGGACAGAGATATGACTTGGCCCAGGTTGACAGCAGTGGGTGACGTTGTGCATTGTCTTTCCCCCACTTGAGAGGACAAGCTATGAGTGAGATAGAGGTTTCTTAGCGGTACAAGTCAATGTCTGTATCAATCTGAACAGTGTGCTGTGTTCTGCGGTCCCCATGACTGTTATTAGTCGTATTCCCCAACTTGCAGGCACGTGCACACATAGGGCTCAACCTGGGCAGTGCACATGCCCTTTTTAGTCTTGGATAGAAAATGCCCTTCCAAAATGATCAAACGTGCCCCCGCGACGCGACGCGACACACCCTCCGTCCCGCCCTTCAGTAGACGCGCGACAACACCGCTCTTGAGTATGCGCGCTCAACCCCCCTCGCTGCTTTACAGTACGCGCGCGACAACACAGCTGATCAGAACGCGCGCGACAACACCGATATTCAGTACGTGCGCGGCGACAACACCTGCTTTAGGTTTCGATCATTTTCAGCTCTTTTTCATCCCCGCTACTAGAAGCACACTCCATTTCCGCATTACTGGATCTGTAGCGACAACAGACCGCAAAGGATTATGGCCACGCCTGGGCTGATGGGAATTGTAGTTTCTGCTACCTCCCGTTCACTTCATTCGCCTGAGCAAACTTTCTCAGAAGACCTATAGTTTTACCGAGTCATGTGACTACAGTAATATTGAAAAAAATTGCTATTGCGGTATGACGGTATTTACAATACTGTTACATCCCTAATATATATATATATATATATATATATATATATATATATATATATATATATATCCCCCATTCCACCACATCCCAAAGGTGCTCTATTGGATTGAGATCTGGTGACTGTGGAGGCCATTTGAGTACAGTGAACTCATCGTCATGTTCAAGAAACCAGTCTGAGATGATTCACGCTTTATGACATGGCGTGTTATCCTGCTGGAAGTAGCCATCAGAAAATGGAGACACTGTGGTCATAAAGGCTGTGATGTTGACACGAGGCTCAATTGGTACTTATGGGCCCAAAGTGTGCCAAGAAAATATTCCCCACACCATCACACTTTCTATCAGCTGGAACCAGTCTGGCCATTCTCCTCTGACCTCTGGCATCTATAAGGCATTTGCACCCACAGAACTGCCCAACTGCAGAACTTTTCTCTTATTTAAACCATTCTCTGTAAACCCTAGAGATGGTTGTGCGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAGACCAGCCCTACTGGCACCAACAACCGTGCCACATTCAAAGTCACTTAAATCAGATTTCTTCCCCATTGTGATGCTCGGTTTAAACTGCAGCAGTTCGTCTTGATCATGTCTTCATTGCCTAAATGCATTGAGTTGCTGCCATGTGATTGGCTGATTAGGAATTTGCGTTAACGAGCAGTTGAACAGGTGTACCTAATAAAGTGGCCGGTGAGTGTGTATATGTTTTGTATTTCTTTGACATGCTTAATTTGATCACATCATTTTCAACGCTTCATAGGATTGTAGTTTTTCCCCTCAGGACTTCTCAGCTGATTTTCACATATTTGGTATGGTTCATTGGTTATTCCTGCTCTTTAACAAATGCTGTTTAAAAGTCCTTATTGGAAAAATAATGGATAAATGCTAGGATAGCTAAATATGCTAAAGAAAACAAATACACTCTATTGCATGGAAAGCAAAATAGATGGAAACAGCAATAGACTAAATATTTGTAGTTTAATAGCTTGTTATAAAGTGAATCTGTTTTTCTCTCAG
Seq C2 exon
GCTGCAAGCAACTGAAGAGCTGCCGTTTCCTTCCCTTTACACCTAAAACACACAAATATCAGCAAACGAGGCCTCGAATACACTTGGAAACACAATAATGAGCCTTTTAAAGCCTGAACAGCAATTATTCATTGAAATATTTTTGTAAATGGACCATTCTGACCCTAAAATGTGAAACATTTTCCATCATTCTGTATATTTTACACACATTCCATAACAGTGTTAATAAAGGCTAGTTTTTATTAACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905:ENSDART00000147187:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=PD(11.3=55.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]