DreINT0114610 @ danRer10
Intron Retention
Gene
ENSDARG00000060946 | pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060526-248]
Coordinates
chr5:31100379-31100845:-
Coord C1 exon
chr5:31100721-31100845
Coord A exon
chr5:31100414-31100720
Coord C2 exon
chr5:31100379-31100413
Length
307 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
TATGCTTTATTCATGGACAGGTG
3' ss Score
7.82
Exon sequences
Seq C1 exon
CAATGACAAGCGATTCTTCTTAAAGACACAGAGCAAAAGAGAAGTGCGATTTCTCTTGTCTAACCTGAGAATCTACATGGAGCATCTGGAGAAATACCCTCACTCTCTGCTCGTCAAGTTTTTAG
Seq A exon
GTGAGCTGGTGAATTTATGACTTCTTTATTAAATCATATTAGGTGAGAAACCAGAAAACTGATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACTTTTTGAACTTTTATTTTTATTGACGTTAGTAAGTTGTACAGACAATAGAATATAAATTTAAAGATGTATTATCATTTACATTATTTCAATTATTAATATTTTGATAATAGTATCAATAGATGCATCTATTTAATACATTTATATGCTTTATTCATGGACAG
Seq C2 exon
GTGTTCACAGGATCAAAATAGCAAATCAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060946:ENSDART00000141328:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=PU(13.4=97.6)
A:
NA
C2:
PF0150413=PIP5K=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]