DreINT0114941 @ danRer10
Intron Retention
Gene
ENSDARG00000060184 | pkn1a
Description
protein kinase N1a [Source:ZFIN;Acc:ZDB-GENE-061207-17]
Coordinates
chr1:45137459-45139023:+
Coord C1 exon
chr1:45137459-45137521
Coord A exon
chr1:45137522-45138946
Coord C2 exon
chr1:45138947-45139023
Length
1425 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TGTTTGTTTTTGTCTTCCAGAGA
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTTTTATTCTGCTTGTGTAGTTTTAGGGCTTCAGTTTTTACATGACAACAAGATTGTGTACCG
Seq A exon
GTGAGTATGCAGGAAATAAGATCTCTGCAAATGTTCTTTGTTTTTAAAGAATGTTACATGTGTTTGTGTGTTTTTTTAACAATTGTATTGATTAAAATAACCTGAAAAATCACATGTACAAATCCTTTGGCAGCAATTACAGCCTCAAGTATTTATGAATATGATGCTGCAAGCTTGGCACAGCTGTCTTTGGGAATTTTTGCCCATTCCTCTTTGCAGTAGCTCTCAAGCTCTATCAGGTTTGATGGGAAGTGATGATGTACAGCCATTTTCAGATCTCTCCGGAGATGTTTAATAGGAGTTAGGTCTGGGCTCTGGCTGGGCCACTCAAGGACATTCACTGAGTTGTTGTGAAGCCACTCCATTGATATTTTGGCACTGTGCTTTGGGTTATTGCCCTGCTGGAAGATGAACCGTTTCCCCAGTCAGATATCAAGAGCACTCTGAAGCAGATTTTCATTCAGGATGTCTTTGAACAATGCTGCCTTCATTTTTCCCTCTACCCTGACTAGTCTTCCAGTTCCTGCTGCTGAAAAACATCCCCACAGCATGATGCTGCAACCACCATGTTTCATTATAGGGATGGTATTAGCCTGGTGATGAGTTTTGCATGGTTTTCTCCAAACGTAACGACTGGCATTTACTCCAAAGAGTTCAATTTTAGTCTCATCAGACCAGAGAATTTAGTTTCTTATGGTCTGAGAGTCCTTCAGATGCCTTTTGACAAATTCTAGGTGGGAATGGCATCTGTCTGCTCACTCAGCTTAGATAGCCGGCCAGTTCTAGGAAGAGTCCTGGTGGTTCCAAACATCTTCCACTTATGGATAATGTAGGCCACTGTGCTCATTGGAACTTACAGAGCAGCAGAAAGTTTTTCTGTAACCTTCCCCAGCCTTGTGCCTCGAGACAATCCTGTCTCAGAGGTCTACAGACAATTCCTTTGTCTTCATGCTTGGTTTGTGCTTTGACATGCACTGTCAACCCTGAGACCTTATAAAGACAGGTGTATGCCTTTTTTAAATCATGTCCAATCAACTGAATTTATCACAGGTGAACTCCAATCAAGCTGCTGAAACATCTCAAGAATGATCAGTGGAAACAGAATGTACATGAGCTCAATTTAGAGCTTCACTGCAAAGGCTGTCAATACTAATGTACATGTGATTTTTTCAGGGTTTTTATTTTTGATAAATTTGCAACAATTTCAAAAAATATTTTTTTACATTGTCATTATGGGGTATTGTGTGTAGAATTTTGAGGAAATAAATTCATTTTGGAACAAGGCTGTAACATAAGATAATGTGGAAAAAGTGAAGCGCCATGAAAACTATATATTCTGATATATATAGTTTTATATATAGAATATTTTGAATATATATATATATATATTCTCACACAGTCAAAATGTTTGTTTTTGTCTTCCAG
Seq C2 exon
AGATCTTAAATTAGACAACTTGCTGCTTGACACAGAGGGTTATGTGAAGATTGCCGACTTTGGATTGTGTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060184:ENSDART00000132555:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]