DreINT0116055 @ danRer10
Intron Retention
Gene
ENSDARG00000023111 | plg
Description
plasminogen [Source:ZFIN;Acc:ZDB-GENE-030131-1411]
Coordinates
chr20:42791378-42794592:-
Coord C1 exon
chr20:42794447-42794592
Coord A exon
chr20:42792254-42794446
Coord C2 exon
chr20:42791378-42792253
Length
2193 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGTTCCTCAAACTCTTTTAGGGT
3' ss Score
9.23
Exon sequences
Seq C1 exon
ATACTGGTGGAGAAGGCTACCTGAAAGAGACCGGTTTCCCTGTAATTGAGAACAAAGTCTGTAACCGTCCATCATTTCTGAATGGCCGTGTGAAGGACCATGAAATGTGTGCTGGGAACATAGAAGGTGGAAATGACAGTTGCCAG
Seq A exon
GTACAGTATGAGAGCATTCAGGACATTTTAACCTGCCTAGTTAACCTCATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATGGAAGTGCCCTGAAAAATAATTAGTAAAATATTATGTACTTTCATCATGGCAATGATAAAATAAATCAGTTATTAGAAATGAGTTAATAAAACTATTCTCTTTAGAAATGTGTTGAAAAAATTTTCTGTCCGTTAAACAGAAATTGGGGGAAAAAATGAACAGGCGGGTGAATAATTCTGACTTCAACTGTATTTATATATATATTAGTGGTGTAATGGATCTCAAATTTCACGATTTGGATCACACTACGGTTTTTGAGTCACGGATCGGACCATTTTTCGGATCAGAAAAAAAAAAGGGAGGAGACAAATGCAGGGTTCATATGTTCATGGAAAACAGATATCTGTATGCTTGAATATAGGTTATTTACTTCTTTTCTGTCCTGGTCAATCACATGCTTTCACATTATCAATTTTCAATAATCAATTTTACATAGATATAAATATAAACTGAAACTAAATAGATTGTTGCGTGTTTTACGAGATGCTGTAATAAATTTGAACATGTATTGTTTTTGTTTTACCACGCATGTAGACATTGCATGAAACATAAGGTCATGAAAATTTACTTGAAAAATGGAAAAATCATGGAAAAGTCATGAAAGTTTAGTAGTAAAAATGTGTATGAACCCTGCAAATGTCATTTACATCCCATTTATTAAAAACAGCACTGCCAGACACTTTTGACACTTTAACAAACAGAACATAGAACCTGTTATTTTATTGAAAATAAAAATCAAGAAAGAACCAGCTGAAAAAAAGGAAAATATTCAATATGAAAAATTGCTACTGTTGCTGATAATGCTAAATATAGAAATCTAACATCTTGTTCAATGGATCATATTTATTTTCAATTAATAATTCAACAATTCACTCATAAAACATCATGTTTCATTATAGGTGGATCATTTCTGAAAACTTATTCAGTGACACAATTTGATGGTTTGTCGCCACCCATTGGTTACACAATGTAATTGCTACAACATTCATCAGCGTCAAGTTCCATTAAAAAGTGATTTTATTCTTTACCATAAACATCAGTGATTATATCTGAACTATGAACTGTTCTCCCAGCACTTCTGTGTTATTTAATCGTTTTAACAAACTAAAAAAGTGTAAAAACTTAATCTCTCTTAATCAAACGCAGATTTGACTGCAGCGCTTAGGATTAATAAAAATTTGCAAATCATTATCATTCATCATTTATGTTGCGCGGGTTTGAATTGAGATTGCAATCTTTTAATGTTAAATCATGCAGCTTCACACTGAATGCATTAATGCAGGCTAAACAAACAGTGACAGAAAACTCCTTTAATTAATAACCTAAGAAAGCATTTAGGTCCCACCACAACTTTTTTCATCATCATACTATAGGGAAGCCAAAATGCTTTTATACACAAGATTTGAATGACGCAGGAGGCGATCTCTCTCTCTCTAAAGTTGTTAATCCGCGGGTCACGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATACACATACATACATACATACATATATATATAAATATATATACACACACACACACATATATACGTATGTCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCCTCTTTCACAAACTTTGCATTTACTTAAATATTTGAGATGAAAGTTTCTCAGGAAACCCATTGCTTTTTGTAAAATAGTGCAAAGGGTTTGTAAGACAAACATTACGTTAACGTTAAACATGCTAAATAATCTGCCAGTGACATAAGTAAAATAACCTTTTAAATTGAAAACAATATTATTTTACTTATTAAATATACATATTAAATATGAAATATTATTTACCCCACTGGCAGATTATTTACACTAGCATGATATAAGAATGACATTTTTAACTTGTTATTTCTAAAAGCAAAATAACGTTTTAACATATCTAAAAAATACTGAATATTTAGACAAGAAACAAGACAAAACTCTTTGTTAGGAAAAGCTAAAAACTACAGTGTTTTGTAGTCTAACCTGTTCCTCAAACTCTTTTAG
Seq C2 exon
GGTGACAGCGGTGGACCTCTCGTCTGCTATGCACAGAACACCTTTGTCCTTCAGGGAGTTACATCATGGGGTCTGGGCTGCGCTAATGCCATGAAACCGGGAGTTTACACCCGAGTCTCGAAGTTTGTCGACTGGATTGAACGCAGCATAAAGGAAAACTGAGAACTGATCGGATCAATCAAATGATCTACAACAGAATTTAAGTGTACAACTCATGATGAAATAATAATGAAAATAAAGTGATATTCTAAGAGACCCTGTTCAGAAGTTCAATAGTTACGGTTGAAGTAAGAATTATTATCCCCCCCCCTGTGAATTTTTGTTTCTTTTTTAAATATTTCCCAAATGATGTTTAACAGCGCAAGGAAATTTTCACAGCATGTCTGATAATATTTTTTCTGCTGGAAAAAGTCTTATTTCATTTATTTTGGCTAGAATAACAGCAGTTATACATTTTTTTAAAACCAATTTAAGGTCAAAATTATTAGCCCCTTTAAGCTTTTTTTATTTTTTATGATTGTTTCCAGAACAAACCATTGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAATAATATCAGTCAAATATTATTTACTGTCATCATGACAAAAATAAAATAAATCAGTTATTAGACTAGAGTTATTAAAACTATTATGTTTAAAAATGTTTTCTCTCTGTTAACGGAAGAATAAACCAGATGTCTTCCACTATGAACAGGCAATTCCCAGTGAACATGTTTTATTACAGAACTTTCTAGAATGTAATCAGATCTGGTAAAGGAAAAATAGTTTGAATACATTAAACAGTCGGTAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023111:ENSDART00000045816:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]