DreINT0116595 @ danRer10
Intron Retention
Gene
ENSDARG00000102607 | pmpca
Description
peptidase (mitochondrial processing) alpha [Source:ZFIN;Acc:ZDB-GENE-030131-5809]
Coordinates
chr5:64351231-64354689:+
Coord C1 exon
chr5:64351231-64351301
Coord A exon
chr5:64351302-64354486
Coord C2 exon
chr5:64354487-64354689
Length
3185 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TGTTGTTTATTGATATGCAGGTA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GCTCATGGTCAAATAGAATCCAACATGGCTGCTCACATGTCCAGACTGAGGGGCTGGAGCCGAGCGCAAAG
Seq A exon
GTTTGCTCTAAAGTCTTTTTAAATGTCCAGTGTGATGAAATGCATTACACATTTCGAGGTGCGGCAACATGTATGTTCTGACTTCGTAAAATAATGTATTTCGTATGTTTTCTGCGCCTTATAAAGTCGCTTTATGGCGGTAATGTTGGAGACGTACAATATCTCGCGTGTTTTTCCTCCACTTCAATCAAATTAACGTTAAATTGTGTTGACAGCAAATCTCACAACTCCCGCTGTGGATAAATTAATGTTCTTATTGCTGCTCATTTAACTGTGTTGTTGTTTAATGCTGAGAAACCTGCAGAAAAGTCAGTATGGGGGTGTAAAACTTTAGGTAAAGTTGGTTTTATATTTGCACATTCGTTCAGTGACAACTTCTGACACGCTTCCTATATTATTTACCATGGTATTTTCAATATTCGGTCTGAAATGACAGTATAACTTCAAAACAACATTAGCGCTATTTAATACACTGTGAACAACGTTGTACGATGATATTCACTGGCATTGAGGTAAAGTTGATGTTATATTCACACATTCGTTCAGTGACAACTTGTGACATGCACCCTCTATTGTTTACCATGACTTCAAAACAGCATTAGCACTACTTAATAAACTGTGAATAACGTTGTTAGATAGTCATTGACTCCTAATGTGATCTCTATTTAGAATTAGCAAAGAACACTTTTCTGAAAATATATTACTAAAGTAAAAGTCCAAATATTAAACAATCTTTACCCCAATGTCACTGGCTGCTAATATAATTTCCCTGTTTAGAATTAGCAAATACTACATTTCTAAAATTATATTGGCAATTTATCCATAATAATATAAAACCAACCCTAATCCTTTGTGTAAAAAGCACTCCAATATGTTATTAACCCAAATGTAAGTGACTGTTGGGCAAAAATATGCTTGAGTAAAAGTAACAGGGTTCATACACATTTTAACTACTAAAATTCCATGACTTTTCCATGATTTTTTAAAGACTTTCTAGTAAGTTTTCATGAGCTAATGTTTCATGCAATGTCTACATTTGCGTGGTAAAAGAAAATTTATTACAGCATATCGTAAAACAAGCAGCAATCTATTTAGTTTCAATTTATATCTATCTGAAGTTGATTTAGATAATGCTTACACCTATGGGGTCAATCTAGGGCCATATATACTTGTAAAACAAAAGAAAGTTTTGCAAGCAAAAAAGAAGCATTGAGCAAAAAAAAATTTAAATCGCAAAGCAAAAATTTGATTTTAAGAAATAAACTTAATTTTGCTAAACTGCAAAAGGAAGATTGGGTCTTGAGAAAAAATGAAATTCGCAAACAAAAAAGAATTGCAAAAAAAAAAAAATTTAATTAATAAATTTCAGGCAGAGCAAAAAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCAACCGTTAGTTTGCGATGCTGTTTTTACTTTGCACTTCCTTGCAGCCCAGTAGGGTGTTGCCTATTGTAAACACCCAAGTTTCCTTGACTCCGTTTTGGGGCAAAAACAGCCCCACTGTTTATTACAGACATAACTGTATCTTAAATTTTCAACCGCTGCACAACAACTAGGACTACGTTCTCAGTTGTATAAAGCAAACAGTCATGCAAATGTTAATGTAACGAGGATTAGAGTTATAATAATGTCTGCAACTGCAACACTGTATCAAGCCTCCTTTCCACAGCACATGACATTTGGACATGACTGTCGGAATACGCCCCAATGAGACCAATCGAGGATCAAAATATGACCTATCTATACAGAAATTTTAAACATGAATCAATCAATAGCTTTTTTTAATGTCTAATCATCTCGTTTAATCCTGCTGTTTTTTTCGCAGCGCCGTACAACAGAATTTCGCACACACAAACTCTAGTGTGACTGCAGCTTAAATAAGTGGGAAAAAAAGCAAGAGCCATTATTCTCTGTGCGTTCACCATGGTTGAATGTATACTAGAAACTCATAGACAGCTAAAAATATTGGAGGAAATGTAGAGACAACATAAAAAATATATATTTTTATTGCTTCATTACTTGCATTTATGAGTAGAAATGTTTTTTATAGACTTGATAAAAAAAAACAAAAAAACAAATAAACTAGTATTTCTCATCACACACTGAAATACATCACATCCGGTCGGCCGGTCGCATACAGTCTAGTCGCAGGAGTTAAAATATTTCAGCGGATCCGCAGCTCAATTCGGATCTGAATATTCTGCATACGGAGATGATCGGAACTCCACTCAGCTCCCGCACTACTCTCCATTGGAAATAAATGACTTTTGGTCTGTCGCTTGTTGTGTGCAGTGGAAAGGTGGCTTCAGAGTTGCACAAGTTTGTTGATTCACAAACTATGCATGCTCTCTTTCTGTGAACACTTTAAAATATCTGCAGAGTTGTCCAAATTAACATCTTGTGAGTGTTTTATTACTGACACATGTCCGTACAGCAGGATCTAGCGAGACACGGTGGTCTCTGTTCCCGTCAGCGAATTTCAATATTGTTCAGCTACAAACCAAACCGTCTTCAGATCCATGCGTTTCAACAGATTTAGAGGGTTTTTACTGTATTTTACATTTAGGGTTACGTGGTTTATTTTAATGGATATAAATCGATAGATGAATAGAAGTCAGTCTAATTCAAAGCAGCAGCAGTTTTCTCTTGTAGTCCTGTCAGATTAATTTACTGAAGAAAAGGCCCAAATACTTTGAAGTTGTAAAGAATTCAGGAGCTTTGAACCTGTCTGTGCGTTTTTTTTTTATTATTAATATATACTTACATACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATGCACAATGTTTCGAGTTTTTTTTATAGAATGATGTAGAAAAATAAGGAAATTATAGAAGGCAAAAAAAATGTTTTGCTAACAAATAAAGCTTTAAAATAAGCATTTTTGCTAGACAATCAGTTTGGGCCTTCAAAAAAAATTTTGGAAAAAATGTTGAGAACCCCTGGTGTAAATTTATCACTCCAGTCTTTGAATCCTCTGTATTGTTGTTTATTGATATGCAG
Seq C2 exon
GTATGGCATCGCAGTATGTCGACAGTACAGCAGCGGCAGCTCGTATCCCAATGTATCTCTGTCCACACCGCTGCCCGGCATCCCCAAACCTGTCTTCGCCTCAGTGGACGGACATGAGAAATACGAGACTAAAATCACCACATTAGAAAACGGACTCAAAATTGCATCGCAGAACAAGTTTGGGCAGTTCTGTACAGTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102607:ENSDART00000164278:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0067515=Peptidase_M16=PU(9.9=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]