DreINT0116602 @ danRer10
Intron Retention
Gene
ENSDARG00000102607 | pmpca
Description
peptidase (mitochondrial processing) alpha [Source:ZFIN;Acc:ZDB-GENE-030131-5809]
Coordinates
chr5:64357516-64358762:+
Coord C1 exon
chr5:64357516-64357610
Coord A exon
chr5:64357611-64358661
Coord C2 exon
chr5:64358662-64358762
Length
1051 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
3' ss Seq
GATTTCTGTTATTTCTTCAGATG
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGACACAACCATGTATGCGGTTTCAGCTGAGGTGAAGGGTCTGGATACAGTAGTGCATCTCCTGTCAGATGCGGTTTTACAGCCTCGTTTATTAG
Seq A exon
GTTAGTGGCTGAAACGCAACTAATTCATTCAGGTTTTAATGTTAGGTTCAAGAGTTCACACTTAAGCTTGTTTGGCTTGCTGTCCCGGGAGAGAGCCCTGAGCTCATAAACTCCTAGAGCCTGGGCCTCCCTTCCGTTTGCAAGTCAAGAGGGGAGTTTGAGCTCTGGTAGATCTTGAGAACTCCCGTGCTGTAGTAGCTAATGAACAGATGGTGACTGCTATTAAGAAATAACTACTTATTAGGAGCATGTCAATGGTGATGATTTGAATTAGTCAAATGGGGGGGGGGGGGCGACGTGTTAATTCTGCACAGAAATGTCTGCTGGCTTGGTAAAGACTAGAACCCGTGACGTCTTTGCTGTGAGGCAACAGTGCTAATCACTAGGCCACCGTGCCACTCATCTAGAAAGGAGGAGGAGTATGGGTGAAAGTAGGGGATTCTTCAAAACGAAGATGGTTGTTATATGGATTTTAGGGTATTTATAGCGGCTAAGGAATCGTCTGATTGGTGAATCATAAATAATATAATGCGGTAACGGCTGCAAGCAATCATCCTCTCGAAATTAGTTTATAAATAAACTTCACTTATTGAGGATCTAATGCAGACTTGAGTGCTGCAGTTGCATAAAATCATTGCAACTACATAAATGAGGGGAACGCAGCATTTTATATTTATATTTCTTATTACACTTAAGAGATTTGACTTGTTCATCTCAGGAGTTCTCAAAATGAGGCGGTTGAAGTAAACGTTCACATGAAAATTAAAAAATATGTTTGTAAGGCTTTCATACATGCCAAAAAAAAATAAACAATAACTTTAAAGTTTATCAATGTTGTTTATTTTTCCTGAAAACTCGTGAAGGACCAAGAAGATTGAAGCGTCTCATTTCTCACAGGATGTTTTCAGTATTATTGCAGTTTTTCATGGTCATTCTAACATGGTAACTTGGCAAGAAAGGTGTCCACAAAGTGAGTCATTAGTATTGAGAAACAAACAATGAGTTGCTGTCTTCATTGGTTTGCTTTGTCTGATTTCTGTTATTTCTTCAG
Seq C2 exon
ATGAGGAGATTGAGATGGCCAGAATGGCTGTTCGGTTTGAGTTGGAGGATCTGAACATGAGGCCTGACCCGGAGCCTTTACTGACAGAAATGATTCATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102607:ENSDART00000164278:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(21.2=100)
A:
NA
C2:
PF0067515=Peptidase_M16=FE(21.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAACCATGTATGCGGT
R:
AATCATTTCTGTCAGTAAAGGCTCCG
Band lengths:
190-1241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]